Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00295 TTGGGGTTCATCATGACTATGGAGGACCGAGTGGATGCAGTCTCCGGTGAGGCTGACAAGTTTCCGGTCGGTCTGCGTGTCCTTGTGGTGGACGACGATCTTTGTTGCCTCAAATTGGTGGAGACTATTCTTAAAAAGTGCCGGTTTAATGTAACGACCACCAGTCAGCCAATGGAAGCATTGAAGATGTTAAGAGAAGATAAAAACCGGTTTGAAATTGTAATTACTGATGTAAATATGCCTGGAATGGATGGTTTTAAGCTTCTCGAGCTGATTGGGCTTGAAATGGACCTCCCCGTTATAATGTTGTCGGCTCATAGCGACACGAAATACGTTATGAAAGGAGTTCAACACGGGGCCTGCGATTATCTGGTGAAGCCGTGTCGAATGTTGGAGTTGCAGAACATTTGGCTGCATGTTTTCAAGAGAAAGCATATGAGCCAGAAGGACAAGAACAATAACATCCCAAATCAAGATGATGAAGAAGGATTGGCACAGCCTGAAAATCCCAAAAATTCCGATGATTCGAAAGCGGGTCAGAAGAGGAAGGACCGGAACCAAGGGGAGGAAGACGAGAATGGCGAAAGTGAGACCGAAGATCCGGCTACGACTCAGAAGAAGCCAAGAGTGGTTTGGTCACTCGAGCTGCACCAAAAGTTTGTAGCAGCTATTACTCATTTGACTATTGAAAAGGCCGTCCCGAAGAAGATTCTCGATTGGATGAACGTCGAAGGACTCACTCGAGAAAATGTGGCCAGCCATCTGCAGGAGTTGCATTTTATACACTCATTTGGTCATTTGATATTGCAGAAATATAGGCTCTACCTGAAAAGAATTGAGGCTGAAAAAAATAAACAGGACAATCGGATGCACATAAGGTCAATTGAGGGATTTGGGTTGCCGGAATCTCGAAGATTTCCGACCATTCCATTCTCGTCGACTCCGCCTAGTGGAGTTTTTAGTAGATTCAACTCTCCCTCCGGATTGAACATGAATGGGATTGTTTCTCCAGGATTAATCCAGCAAAATACTTCTCAGAACATGAACAATTCCTTCAGTTTACGCAGAAAATTCCCGAAAAGCCAATTGCCAGAGTTATTTCAGGGAAATCCGAGATCATTAGAGGTTAATCCGATTAACAGTCTCTCTGGCTTCTCATATCCGACTAGTTTTCCCAACAATAGAGTTGGTTTAGCTAGCTCGATAAATCCCTGGCCGAGATTGTTGGCGAATCATTTGCTTTTGCAAGGAAATCAACATGTTGTAGGAGCCTCTTCATTGAAATCGGAATCTTTCAATATTGGCACAAACCTCACGTCGAATCTTTTGGTTCATGATCAAAGCAAAAGAGATTGGCAGCAAGAAGTTCATTTGTCTAAATTTCCATCTACCGGCTTCGGATCTTTCGAAACTCACTATCATCATGAAATGCCTTTGAACAACTCGAGAATATCTCATGCTCACTCTCCTACCGGTATACCATCGCTGAATGCAGATCAAAATCCTCAGCCTAATTTTCTTGTAGACGTCCCCTGCCAAGATCTGATCGGCAGTGCCGTCCAAACTGTGAATTGTATACAAAAGCCGAACGGGGAAGAACACAAACCCGTTTTTGGACACAATCTAAATCATTCCACGATGAATCCTCCACCTTTGGCCGATGAAATTATGGATCAAAATGACATGGCATGTGTACAAAATCCCGATATATCACAATTGATCGCCCAATCCAATGACAGTATGGTATCATTTGGGCAGCTCAATGAGGCCGATAAACCGCTGGCAGACCCGAGCATGAATTTCAATGCGAACAACTTCTTGAATATGGCACAAGATGGGTTCTTTCAAAGTGACTTTGATTCATTAGATGATATGGTCAATGTGGACGACAAACATGTAATCTCTCTAATCGTCCTCCTATATATCTCTAATTATCTCAATCTAAAAATGTCCTTCCCCAAAATAAAATTTCGGTTGGACGATAAATTAAAGTAG 1995 42.91 LGFIMTMEDRVDAVSGEADKFPVGLRVLVVDDDLCCLKLVETILKKCRFNVTTTSQPMEALKMLREDKNRFEIVITDVNMPGMDGFKLLELIGLEMDLPVIMLSAHSDTKYVMKGVQHGACDYLVKPCRMLELQNIWLHVFKRKHMSQKDKNNNIPNQDDEEGLAQPENPKNSDDSKAGQKRKDRNQGEEDENGESETEDPATTQKKPRVVWSLELHQKFVAAITHLTIEKAVPKKILDWMNVEGLTRENVASHLQELHFIHSFGHLILQKYRLYLKRIEAEKNKQDNRMHIRSIEGFGLPESRRFPTIPFSSTPPSGVFSRFNSPSGLNMNGIVSPGLIQQNTSQNMNNSFSLRRKFPKSQLPELFQGNPRSLEVNPINSLSGFSYPTSFPNNRVGLASSINPWPRLLANHLLLQGNQHVVGASSLKSESFNIGTNLTSNLLVHDQSKRDWQQEVHLSKFPSTGFGSFETHYHHEMPLNNSRISHAHSPTGIPSLNADQNPQPNFLVDVPCQDLIGSAVQTVNCIQKPNGEEHKPVFGHNLNHSTMNPPPLADEIMDQNDMACVQNPDISQLIAQSNDSMVSFGQLNEADKPLADPSMNFNANNFLNMAQDGFFQSDFDSLDDMVNVDDKHVISLIVLLYISNYLNLKMSFPKIKFRLDDKLK 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2456059 2458610 + Bma000463.1 Bma01g00295 74812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00295 664 CDD REC_typeB_ARR-like 27 141 - -
Bma01g00295 664 PIRSF RR_ARR_type-B 4 654 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bma01g00295 664 SMART REC_2 25 137 IPR001789 GO:0000160
Bma01g00295 664 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Bma01g00295 664 Pfam Response regulator receiver domain 27 134 IPR001789 GO:0000160
Bma01g00295 664 MobiDBLite consensus disorder prediction 164 190 - -
Bma01g00295 664 SUPERFAMILY CheY-like 24 149 IPR011006 -
Bma01g00295 664 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 633 - -
Bma01g00295 664 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 633 IPR045279 GO:0009736
Bma01g00295 664 Gene3D - 203 280 - -
Bma01g00295 664 SUPERFAMILY Homeodomain-like 204 258 IPR009057 -
Bma01g00295 664 Gene3D - 25 161 - -
Bma01g00295 664 Coils Coil 269 289 - -
Bma01g00295 664 MobiDBLite consensus disorder prediction 147 206 - -
Bma01g00295 664 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 258 IPR006447 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00295 Bma07g00742 CCT
Bma01g00295 Bma07g00742 ECH
Bma01g00295 Bma06g00994 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00295 Bma-Chr1:2456059 Bma06g00994 Bma-Chr6:46458801 0 dispersed
Bma01g00293 Bma-Chr1:2444553 Bma01g00295 Bma-Chr1:2456059 0 proximal
Bma01g00295 Bma-Chr1:2456059 Bma01g00296 Bma-Chr1:2471415 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56628 PF00072 Response_reg 6.60E-25 CL0304 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00295 K14491 - jre:109012904 472.626