Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00296 | TTGGGGTTCATCATGACTATGGAGGACCGAGAGGATGCAGTTTCTGGTGAGGCTGACAAGTTTCCGGTCGGTCTGCGTGTCCTTGTGGTGGACGACGATCTTTGTTGCCTCAAATTGGTGGAGACTATTCTTAAAAAGTGCCGGTTTAATGTAACGACCACCAGTCAGCCAATGGAAGCATTGAAGATGTTAAGAGAAGATAAAAACCGGTTTGAAATTGTAATTACTGATGTAAATATGCCTGGAATGGATGGTTTTAAGCTTCTCGAGCTGATTGGGCTTGAAATGGACCTCCCCGTTATAATGTTGTCGGCTCATAGCGACACGAAATACGTTATGAAAGGAGTTCAACACGGGGCCTGCGATTATCTGGTGAAGCCGTGTCGAATGTTGGAGTTGCAGAACATTTGGCTGCATGTTGTCAAGAGAAAGCATCTGAGCCAGAAGGACAAGAACAATAACAGCACAAATCAAGTTGATGAACAAGGATTGGCACAGCCTGAAAATCCCAAAAATTCCAATGATTCAAAAGCAGGTGGTCAAAAGAGGAAGGACCGGAACCAAGGGGAGGAAGACGAGAATGGCGAAAGTGAGACCGAAGATCCGGCTACGACTCAGAAGAAGCCAAGAGTGGTTTGGTCACTCGAGCTGCACCAGAAGTTTGTAGCAGCTATTACTCATTTGACTATTGAAAAGGCCGTCCCGAAGAAGATTCTCGATTGGATGAACATCGAAGGACTCACTCGAGAAAACGTGGCCAGCCATCTTCAGAAATATAGGCTCTCCCTGAAAAGAATTGAGGCTGAAAAAAATAAACAGGACAATCGGATGCACATAAGGTCAATTGAGGGATTTGGGTTGCCGGAATCTCGAAGATTTCCGACCATTCCATTCTCGTCGACTCCGCCTAGTGGAGTTTTTAGTAGATTCAACTCTCCCTCCGGATTGAACATGAATGGGATTGTTTCTCCAGGATTAATCCAGCAAAATACTTCTCAGAACATGAACAATTCCTTTGGTTTACGCGGAAAATTCCTGCAAAGCCAATTGCCGGAGTTATTTCAGGGAAATTCGAGATCATTAGAGGTTAATCCGATTAACAATCTCTCTGGCTTCTCATATCCAACTAGTTTTCCCAACAATAGAGTTGGTTTAGCTAGCTCGATAAATCCCGGGCCGAGATTGTTGGCGAATCATTTGCTTTTGCAAGGAAATCAACATGTTCTAGGAGCGGCTCCATTGAAATTGGAATCTTTCAATATTGGCACAAACGGCGCGTCGAATCTTTTGGGTCATGATCAAAGCAAAAGAGATTGGCAGCAAGAAGTTCATTTGTCTAAATTTCCATTGACCGGCTTCGGATCGTTCGAAACTCACTATCATCATGAAATGCCTTTGAACAACTCGAGAATATCTCATGCTCGCTCTCCAATCGGTGTTCCATCGATGAATGCAGATCAAAATCCTCAGCCTAATTTTCTAGTAGACGTCCCCTGCCAAGAAGATCCGATTGGCAGTGCCGTCCAAACTGTGAATTGTATACAAAAGCAGAACAGGGAAGAACACAAACCTGTTTTTGGACGCAATCTAATCATTCCACGATGA | 1605 | 44.11 | LGFIMTMEDREDAVSGEADKFPVGLRVLVVDDDLCCLKLVETILKKCRFNVTTTSQPMEALKMLREDKNRFEIVITDVNMPGMDGFKLLELIGLEMDLPVIMLSAHSDTKYVMKGVQHGACDYLVKPCRMLELQNIWLHVVKRKHLSQKDKNNNSTNQVDEQGLAQPENPKNSNDSKAGGQKRKDRNQGEEDENGESETEDPATTQKKPRVVWSLELHQKFVAAITHLTIEKAVPKKILDWMNIEGLTRENVASHLQKYRLSLKRIEAEKNKQDNRMHIRSIEGFGLPESRRFPTIPFSSTPPSGVFSRFNSPSGLNMNGIVSPGLIQQNTSQNMNNSFGLRGKFLQSQLPELFQGNSRSLEVNPINNLSGFSYPTSFPNNRVGLASSINPGPRLLANHLLLQGNQHVLGAAPLKLESFNIGTNGASNLLGHDQSKRDWQQEVHLSKFPLTGFGSFETHYHHEMPLNNSRISHARSPIGVPSMNADQNPQPNFLVDVPCQEDPIGSAVQTVNCIQKQNREEHKPVFGRNLIIPR | 534 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2471415 | 2473614 | + | Bma000464.1 | Bma01g00296 | 74813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00296 | 534 | MobiDBLite | consensus disorder prediction | 151 | 176 | - | - | |
Bma01g00296 | 534 | CDD | REC_typeB_ARR-like | 27 | 141 | - | - | |
Bma01g00296 | 534 | SMART | REC_2 | 25 | 137 | IPR001789 | GO:0000160 | |
Bma01g00296 | 534 | MobiDBLite | consensus disorder prediction | 177 | 191 | - | - | |
Bma01g00296 | 534 | MobiDBLite | consensus disorder prediction | 147 | 207 | - | - | |
Bma01g00296 | 534 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 5 | 521 | - | - | |
Bma01g00296 | 534 | SUPERFAMILY | CheY-like | 24 | 154 | IPR011006 | - | |
Bma01g00296 | 534 | Coils | Coil | 256 | 276 | - | - | |
Bma01g00296 | 534 | Gene3D | - | 25 | 162 | - | - | |
Bma01g00296 | 534 | PIRSF | RR_ARR_type-B | 4 | 527 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Bma01g00296 | 534 | Pfam | Response regulator receiver domain | 27 | 134 | IPR001789 | GO:0000160 | |
Bma01g00296 | 534 | ProSiteProfiles | Response regulatory domain profile. | 26 | 141 | IPR001789 | GO:0000160 | |
Bma01g00296 | 534 | SUPERFAMILY | Homeodomain-like | 205 | 265 | IPR009057 | - | |
Bma01g00296 | 534 | Gene3D | - | 204 | 267 | - | - | |
Bma01g00296 | 534 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 208 | 261 | IPR006447 | GO:0003677 | |
Bma01g00296 | 534 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 5 | 521 | IPR045279 | GO:0009736 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00293 | Bma-Chr1:2444553 | Bma01g00296 | Bma-Chr1:2471415 | 0 | dispersed | |
Bma01g00296 | Bma-Chr1:2471415 | Bma06g00994 | Bma-Chr6:46458801 | 0 | dispersed | |
Bma01g00295 | Bma-Chr1:2456059 | Bma01g00296 | Bma-Chr1:2471415 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56629 | PF00072 | Response_reg | 4.60E-25 | CL0304 | Bma | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00296 | K14491 | - | jre:109012904 | 443.351 |