Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00296 TTGGGGTTCATCATGACTATGGAGGACCGAGAGGATGCAGTTTCTGGTGAGGCTGACAAGTTTCCGGTCGGTCTGCGTGTCCTTGTGGTGGACGACGATCTTTGTTGCCTCAAATTGGTGGAGACTATTCTTAAAAAGTGCCGGTTTAATGTAACGACCACCAGTCAGCCAATGGAAGCATTGAAGATGTTAAGAGAAGATAAAAACCGGTTTGAAATTGTAATTACTGATGTAAATATGCCTGGAATGGATGGTTTTAAGCTTCTCGAGCTGATTGGGCTTGAAATGGACCTCCCCGTTATAATGTTGTCGGCTCATAGCGACACGAAATACGTTATGAAAGGAGTTCAACACGGGGCCTGCGATTATCTGGTGAAGCCGTGTCGAATGTTGGAGTTGCAGAACATTTGGCTGCATGTTGTCAAGAGAAAGCATCTGAGCCAGAAGGACAAGAACAATAACAGCACAAATCAAGTTGATGAACAAGGATTGGCACAGCCTGAAAATCCCAAAAATTCCAATGATTCAAAAGCAGGTGGTCAAAAGAGGAAGGACCGGAACCAAGGGGAGGAAGACGAGAATGGCGAAAGTGAGACCGAAGATCCGGCTACGACTCAGAAGAAGCCAAGAGTGGTTTGGTCACTCGAGCTGCACCAGAAGTTTGTAGCAGCTATTACTCATTTGACTATTGAAAAGGCCGTCCCGAAGAAGATTCTCGATTGGATGAACATCGAAGGACTCACTCGAGAAAACGTGGCCAGCCATCTTCAGAAATATAGGCTCTCCCTGAAAAGAATTGAGGCTGAAAAAAATAAACAGGACAATCGGATGCACATAAGGTCAATTGAGGGATTTGGGTTGCCGGAATCTCGAAGATTTCCGACCATTCCATTCTCGTCGACTCCGCCTAGTGGAGTTTTTAGTAGATTCAACTCTCCCTCCGGATTGAACATGAATGGGATTGTTTCTCCAGGATTAATCCAGCAAAATACTTCTCAGAACATGAACAATTCCTTTGGTTTACGCGGAAAATTCCTGCAAAGCCAATTGCCGGAGTTATTTCAGGGAAATTCGAGATCATTAGAGGTTAATCCGATTAACAATCTCTCTGGCTTCTCATATCCAACTAGTTTTCCCAACAATAGAGTTGGTTTAGCTAGCTCGATAAATCCCGGGCCGAGATTGTTGGCGAATCATTTGCTTTTGCAAGGAAATCAACATGTTCTAGGAGCGGCTCCATTGAAATTGGAATCTTTCAATATTGGCACAAACGGCGCGTCGAATCTTTTGGGTCATGATCAAAGCAAAAGAGATTGGCAGCAAGAAGTTCATTTGTCTAAATTTCCATTGACCGGCTTCGGATCGTTCGAAACTCACTATCATCATGAAATGCCTTTGAACAACTCGAGAATATCTCATGCTCGCTCTCCAATCGGTGTTCCATCGATGAATGCAGATCAAAATCCTCAGCCTAATTTTCTAGTAGACGTCCCCTGCCAAGAAGATCCGATTGGCAGTGCCGTCCAAACTGTGAATTGTATACAAAAGCAGAACAGGGAAGAACACAAACCTGTTTTTGGACGCAATCTAATCATTCCACGATGA 1605 44.11 LGFIMTMEDREDAVSGEADKFPVGLRVLVVDDDLCCLKLVETILKKCRFNVTTTSQPMEALKMLREDKNRFEIVITDVNMPGMDGFKLLELIGLEMDLPVIMLSAHSDTKYVMKGVQHGACDYLVKPCRMLELQNIWLHVVKRKHLSQKDKNNNSTNQVDEQGLAQPENPKNSNDSKAGGQKRKDRNQGEEDENGESETEDPATTQKKPRVVWSLELHQKFVAAITHLTIEKAVPKKILDWMNIEGLTRENVASHLQKYRLSLKRIEAEKNKQDNRMHIRSIEGFGLPESRRFPTIPFSSTPPSGVFSRFNSPSGLNMNGIVSPGLIQQNTSQNMNNSFGLRGKFLQSQLPELFQGNSRSLEVNPINNLSGFSYPTSFPNNRVGLASSINPGPRLLANHLLLQGNQHVLGAAPLKLESFNIGTNGASNLLGHDQSKRDWQQEVHLSKFPLTGFGSFETHYHHEMPLNNSRISHARSPIGVPSMNADQNPQPNFLVDVPCQEDPIGSAVQTVNCIQKQNREEHKPVFGRNLIIPR 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2471415 2473614 + Bma000464.1 Bma01g00296 74813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00296 534 MobiDBLite consensus disorder prediction 151 176 - -
Bma01g00296 534 CDD REC_typeB_ARR-like 27 141 - -
Bma01g00296 534 SMART REC_2 25 137 IPR001789 GO:0000160
Bma01g00296 534 MobiDBLite consensus disorder prediction 177 191 - -
Bma01g00296 534 MobiDBLite consensus disorder prediction 147 207 - -
Bma01g00296 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 521 - -
Bma01g00296 534 SUPERFAMILY CheY-like 24 154 IPR011006 -
Bma01g00296 534 Coils Coil 256 276 - -
Bma01g00296 534 Gene3D - 25 162 - -
Bma01g00296 534 PIRSF RR_ARR_type-B 4 527 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bma01g00296 534 Pfam Response regulator receiver domain 27 134 IPR001789 GO:0000160
Bma01g00296 534 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Bma01g00296 534 SUPERFAMILY Homeodomain-like 205 265 IPR009057 -
Bma01g00296 534 Gene3D - 204 267 - -
Bma01g00296 534 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 261 IPR006447 GO:0003677
Bma01g00296 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 521 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00293 Bma-Chr1:2444553 Bma01g00296 Bma-Chr1:2471415 0 dispersed
Bma01g00296 Bma-Chr1:2471415 Bma06g00994 Bma-Chr6:46458801 0 dispersed
Bma01g00295 Bma-Chr1:2456059 Bma01g00296 Bma-Chr1:2471415 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56629 PF00072 Response_reg 4.60E-25 CL0304 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00296 K14491 - jre:109012904 443.351