Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00307 ATGTCCTTCACGATCACCAATGGGAACCATACAGAGGAAGACTCTTTCATCGTCCCCTTACTGTCTTCTCAAAGATCGGTCACTAACTGTTCCTCTCAGGTTGCCATTGTTGGTGCTAAAGTCTGCCCCATTGAGAGCCTCGACTACGAGATTTTTGAGAATGAAATCTTCAAGCAGGATTGGAGGAGCCGTAGGAAGTTGCAGATTTTGGAGTATACATTCATGAAGTGGATTTTGTGCTTCTTGATTGGTCTGGTAGTTAGCGTTATTGGTTTCTGTAATAATCTTTCGGTTGAGAATATTGCTGGTGTGAAATTCGTTGTCACCTCCAATATGATGCTTGAGGATAGGTATTGGATGGCCTTTCTTGTTTTTTCTGTTTCCAATTTGGTTCTCACTCTATTTGCAGTAGTGATCACGGCATTGATCTCACCAACAGCAGCTGGTTCAGGTATACCAGAAGTAAAAGCCTATTTGAATGGTGTAGATGCACCCAGAATTTTTTCAATAAAAACATTAGTAGTTAAGGTAGTAGGCAGCATTTCTGTTGCATCATCATCTTTGCTGGTAGGAAAGGCAGGGCCTATGGTGCATACTGGTGCTTGCATTGCTTCTCTCCTAGGTCTGGGAGGGTCAACAAAATATCATTTGACGTGGAGATTTCTTAGATATTTCAAGAACGACAGAGATAGGCGCGATCTTATAACATGCGGAGCAGCTGCTGGAATTGCGGCTGCTTTTCGTGCTCCTGTGGGTGGTTTGCTGTTTGCTTTCGAAGAGATGGTATCTTGGTGGAGAAGTGCTCTTTTATGGCGAGCATTTTTCACGACTGCAGTAGTTGCGATTATATTGCGCTCTTTAATTGACGTGTGCTTTAGTGGAAAATGTGGACTATTTGGTACTGGGGGTCTGATAATGTTTGATGTCTATTCAGAAACTGTTTCATATCACCTACTGGATGTGCCTTCTGTGCTTGTCCTTGGAGTTGTAGGAGGTGTACTTGGAAGCCTATTTAACTTCATTTTGGGTAAAGTCCTTCGAATTTACAGTCTCGTGAATGAGAAAGGCTTTGTATTCAAGATACTGCTTGGTTGCGCCGTCTCAATTTTCACATCCTGTCTTCTTTTCGGATTACCTTGGCTTGCAACTTGCCAAGCTTGCCCAACTAGCTCGTCAGAAGAGTGTCCTACAATTGGACGATCAGGAAACTACAAGAAGTTTCAATGTCCAGCTCATCACTACAATGATCTTGCAAGTCTTATATTCAACACCAGCGATGACGCAATCAAAAATCTCTTCAGCAAAGATACCGACTCGGAGTTTCAATTCTCGTCAGTTATCATATTTTTCATTACTTGCTATTTCTTAAGCATCATCAGCTATGGAGTTGTTGCTCCAATTGGTCTATTCATCCCTGTCATTGTGACGGGTGCCTCCTATGGACGTTTAATCGGAATGTTACTTGGCTCACACTCAAAGCTTAACCATGGCCTTTTTGCTGTACTGGGTGCGGCTTCATTGCTCGGGGGTACGATGAGAATGACGGTTTCTCTCTCTGTCATCATCCTGGAACTGACCAACAATCTCTTATTGCTTCCTTTGATAATGGTGGTTTCTCTCATCTCCAAAACCGTAGCCGACGCTTTCAATAGTAATATTTACGATCAAATGTTGAAAGCCAAAGGGTTTCCTTATCTCGAATCCCATGCAGAGCCATACATGAGGCAGCTGATGGTCAGTGATGTTTTGATGGGCCCGCTTCAAATATTTCAAGGGATCGAGAAAGTGAGTAACATAGTACATGTTCTTAGATCGACAAGACATCATGGTTTTCCTGTCGTTGATGAGCCTCCTTTCTCCCAATCCCCTGTTCTGTTTGGCATCGTTCTTCGAGCCCATTTGGTTACATTGTTAAAGAAGAAAGCTTTTATAGCTACAACAGTGCCAGTCGATATCAGTGCCTATCCGCAATTGTCGGCTGGGGATTTTGCAAAAAGAGGCTCGAATAACACCGAGAATATCGAGGATGTGGAGTTGACAGAGGAAGAGATGGAGATGTTCATCGACCTGCATCTGTTCAGTAATGCTTCACCTTATACTGTTGTTGAGACGATGTCGTTAGCAAAGGCGCTCATTCTTTTCCGTCAAGTTGGATTGAGGCATTTGCTTGTCGTTCCCAAAGTTTCTGGGAGATCGCCAGTTGTGGGCATATTAACTAGGCACGATTTCATGTCGGAACACATATTGAGCTTGTATCCTTCGCTCGTGAGAAGCAGGTGGAAGAGACTGCGAATTAAGATTCCGGATTTTAGGCAATACTTTAAATGA 2328 43.13 MSFTITNGNHTEEDSFIVPLLSSQRSVTNCSSQVAIVGAKVCPIESLDYEIFENEIFKQDWRSRRKLQILEYTFMKWILCFLIGLVVSVIGFCNNLSVENIAGVKFVVTSNMMLEDRYWMAFLVFSVSNLVLTLFAVVITALISPTAAGSGIPEVKAYLNGVDAPRIFSIKTLVVKVVGSISVASSSLLVGKAGPMVHTGACIASLLGLGGSTKYHLTWRFLRYFKNDRDRRDLITCGAAAGIAAAFRAPVGGLLFAFEEMVSWWRSALLWRAFFTTAVVAIILRSLIDVCFSGKCGLFGTGGLIMFDVYSETVSYHLLDVPSVLVLGVVGGVLGSLFNFILGKVLRIYSLVNEKGFVFKILLGCAVSIFTSCLLFGLPWLATCQACPTSSSEECPTIGRSGNYKKFQCPAHHYNDLASLIFNTSDDAIKNLFSKDTDSEFQFSSVIIFFITCYFLSIISYGVVAPIGLFIPVIVTGASYGRLIGMLLGSHSKLNHGLFAVLGAASLLGGTMRMTVSLSVIILELTNNLLLLPLIMVVSLISKTVADAFNSNIYDQMLKAKGFPYLESHAEPYMRQLMVSDVLMGPLQIFQGIEKVSNIVHVLRSTRHHGFPVVDEPPFSQSPVLFGIVLRAHLVTLLKKKAFIATTVPVDISAYPQLSAGDFAKRGSNNTENIEDVELTEEEMEMFIDLHLFSNASPYTVVETMSLAKALILFRQVGLRHLLVVPKVSGRSPVVGILTRHDFMSEHILSLYPSLVRSRWKRLRIKIPDFRQYFK 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2527778 2532493 + Bma000474.1 Bma01g00307 74824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00307 775 Pfam CBS domain 697 745 IPR000644 -
Bma01g00307 775 CDD CBS_pair_voltage-gated_CLC_euk_bac 569 746 - -
Bma01g00307 775 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma01g00307 775 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma01g00307 775 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma01g00307 775 PRINTS Chloride channel signature 553 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma01g00307 775 PRINTS Chloride channel signature 497 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma01g00307 775 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma01g00307 775 PRINTS Chloride channel signature 515 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma01g00307 775 SMART cbs_1 586 639 IPR000644 -
Bma01g00307 775 SMART cbs_1 697 748 IPR000644 -
Bma01g00307 775 PANTHER CHLORIDE CHANNEL PROTEIN 14 767 - -
Bma01g00307 775 Gene3D - 567 746 IPR046342 -
Bma01g00307 775 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 14 767 - -
Bma01g00307 775 SUPERFAMILY CBS-domain pair 569 745 IPR046342 -
Bma01g00307 775 Pfam Voltage gated chloride channel 133 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma01g00307 775 PRINTS Plant CLC chloride channel signature 417 433 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma01g00307 775 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma01g00307 775 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma01g00307 775 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma01g00307 775 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma01g00307 775 ProSiteProfiles CBS domain profile. 693 754 IPR000644 -
Bma01g00307 775 SUPERFAMILY Clc chloride channel 54 569 IPR014743 -
Bma01g00307 775 Gene3D Clc chloride channel 68 566 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00307 Bma-Chr1:2527778 Bma12g00031 Bma-Chr12:877510 0 dispersed
Bma01g00307 Bma-Chr1:2527778 Bma05g00915 Bma-Chr5:47078947 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00307 K05016 - jre:108995632 1176.0