Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00320 ATGACGACCTGCATCAATGTTGCACCTGAGCAACTCTGCTATATACCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAACAATTTGTTTGACATTGTCACAGTCCGATGTGGTCACTGCACAAATCTCTGGTCCGTGAACATGGCTTCTGCGTTTCAGTCACTTTCATGGCAAGATCCCCAGGTTCAAAATTACTCTTACAATCCACCCGATCATTATCGAATCGACTCGGGTTCGTCTTCTAAATGCAACAACAAGATGACACTTCGTCCTCCTACCAAAACTTCAACCGAGCAAAGGCTCGTTAACCGAACTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAGGCGAATAACCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCAAAAAATTGGGCACATTTTCCTCATATTCACTTTGGACTGATGCTAGAAACTAACAACCAGACCAAGGCAGATCACTCAGTAAGTGTTTGA 534 44.01 MTTCINVAPEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCTNLWSVNMASAFQSLSWQDPQVQNYSYNPPDHYRIDSGSSSKCNNKMTLRPPTKTSTEQRLVNRTPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNQTKADHSVSV 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2644910 2647130 + Bma000488.1 Bma01g00320 74837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00320 177 PANTHER PROTEIN YABBY 6-RELATED 1 173 IPR006780 GO:0007275
Bma01g00320 177 Pfam YABBY protein 8 161 IPR006780 GO:0007275
Bma01g00320 177 PANTHER AXIAL REGULATOR YABBY 5 1 173 - -
Bma01g00320 177 CDD HMG-box 115 151 - -
Bma01g00320 177 Gene3D High mobility group box domain 97 156 IPR036910 -
Bma01g00320 177 SUPERFAMILY HMG-box 97 154 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00320 Bma-Chr1:2644910 Bma07g00218 Bma-Chr7:2604726 3.46E-56 dispersed
Bma11g00817 Bma-Chr11:25431353 Bma01g00320 Bma-Chr1:2644910 2.98E-95 transposed
Bma01g00320 Bma-Chr1:2644910 Bma06g00968 Bma-Chr6:46190174 1.42E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56631 PF04690 YABBY 4.50E-69 CL0114 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00320 K25796 - pvy:116130315 297.36