Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00320 ATGACGACCTGCATCAATGTTGCACCTGAGCAACTCTGCTATATACCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAACAATTTGTTTGACATTGTCACAGTCCGATGTGGTCACTGCACAAATCTCTGGTCCGTGAACATGGCTTCTGCGTTTCAGTCACTTTCATGGCAAGATCCCCAGGTTCAAAATTACTCTTACAATCCACCCGATCATTATCGAATCGACTCGGGTTCGTCTTCTAAATGCAACAACAAGATGACACTTCGTCCTCCTACCAAAACTTCAACCGAGCAAAGGCTCGTTAACCGAACTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAGGCGAATAACCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCAAAAAATTGGGCACATTTTCCTCATATTCACTTTGGACTGATGCTAGAAACTAACAACCAGACCAAGGCAGATCACTCAGTAAGTGTTTGA 534 44.01 MTTCINVAPEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCTNLWSVNMASAFQSLSWQDPQVQNYSYNPPDHYRIDSGSSSKCNNKMTLRPPTKTSTEQRLVNRTPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNQTKADHSVSV 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2644910 2647130 + Bma000488.1 Bma01g00320 74837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00320 177 PANTHER PROTEIN YABBY 6-RELATED 1 173 IPR006780 GO:0007275
Bma01g00320 177 Pfam YABBY protein 8 161 IPR006780 GO:0007275
Bma01g00320 177 PANTHER AXIAL REGULATOR YABBY 5 1 173 - -
Bma01g00320 177 CDD HMG-box 115 151 - -
Bma01g00320 177 Gene3D High mobility group box domain 97 156 IPR036910 -
Bma01g00320 177 SUPERFAMILY HMG-box 97 154 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00320 K25796 YAB; plant-specific transcription factor YABBY family protein - pvy:116130315 297.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00320 Bma-Chr1:2644910 Bma07g00218 Bma-Chr7:2604726 3.46E-56 dispersed
Bma11g00817 Bma-Chr11:25431353 Bma01g00320 Bma-Chr1:2644910 2.98E-95 transposed
Bma01g00320 Bma-Chr1:2644910 Bma06g00968 Bma-Chr6:46190174 1.42E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00744 CCT,ECH 1 162 C2C2-YABBY Transcription Factor Family AT1G69180 56.7 5.5e-45 177.6
Bma14g00033 . 62 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 2.9e-40 161.8
Bma07g00218 . 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 62.7 7.6e-58 220.3
Bma11g00256 . 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 57.8 1.2e-55 213.0
Bma14g00033 . 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 56.3 9.0e-43 170.2
Bma12g00169 . 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 3.8e-41 164.9
Bma01g00320 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 2.5e-40 162.2
Bma11g00817 . 11 172 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 4.2e-40 161.4
Bma14g00033 . 29 211 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 1.2e-46 183.3
Bma12g00169 . 29 194 C2C2-YABBY Transcription Factor Family AT4G00180 50.5 5.2e-39 157.9
Bma01g00320 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.4 9.7e-65 243.0
Bma11g00817 . 7 173 C2C2-YABBY Transcription Factor Family AT2G26580 66.5 4.4e-57 217.6
Bma06g00968 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 66.5 2.7e-54 208.4
Bma11g00256 . 1 164 C2C2-YABBY Transcription Factor Family AT2G26580 59.1 8.3e-48 186.8
Bma07g00218 . 6 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.3 6.6e-45 177.2
Bma14g00033 . 19 177 C2C2-YABBY Transcription Factor Family AT2G26580 55.3 4.4e-41 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56631 PF04690 YABBY 4.50E-69 CL0114 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00320 Bma_Chr01 FPKM 0.0 0.0 0.167272 0.0 0.0 0.0 0.0 1.375047 1.424827 2.076925