Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma01g00324 | ATGCAGCCTTCTAGCAGAGAAATGAATCAAGAACTCCTCAGCGATCACCTCCAGATCCAACCCTCCAACTTTCTTCTTCATCACACGTCTCACTTCGATCCATCTTCTTCCCACGACGATTTTCTAGGGCAGATGTTCTCAACCATCCCCTCATCTACTTGGCCTGACCTCAATCCGGCCATCAATTCCGTCATTACCGGCGGCTCCAGCATGCTCAGAGACTTCTCCGACGAAACTCCCCTGCCGAATCCTGAAAATGGTGGCTACTCGTATGACGAGTCGGTAAACTTGCCCTCGAAGCTCCGAAGCCACCAGATCAGCGGTAGCTCTCCTGCTGTAAAAGCAGCGGCGATGATGCTTCAGCAGCACTTCTTGATGTCCAGAGGAGTTGCCGGCGCTGGAGATGGTAACTCATCTGGACTTCTCCCGATGCCTTTATCTATGGAGCCTCCACAAGATGAAGTCACTGATGGCTTGTCTACATTTAAATCTCATAATCCAGTGATGGCAAATTTTATTTTGCAGGGAGGTGATCAAACTCGCTACAGTGGATTCGCCGCCCCGACGTTAAATCATCCACAACATTTCCAGCCTCCTCAGGTATACCCAACCCAACGATCACAAAACCATGGAACTTCAGGTTCGGCGATCAACCAAGTTCCAGCGGGTGGCTCAAACGGGGCCACGGCGGGTCAGCCTAGACAGCGAGTGAGGGCTCGGAGAGGTCAAGCTACTGACCCTCACAGCATCGCTGAAAGATTGAGGAGGGAGAGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTTGTTCCTAACACCAACAAGCTAATTATATGCCAATTACAGACCGACAAGGCTTCCATGCTGGATGAGATCATTGATTACGTTAAATTCCTACAGCTTCAAGTCAAGGTTCTTAGTATGAGCAGATTAGGTTGCGCGGCTGCCGTTGCTCCCCTTGTCGCCGATGTGTCTTCCGAGGGAGGAGGTGACTGCGTCCGGACCGGTGGAAACGGTGGGGAACTTGGCCGTCCGGGCGGAGCTCAGACGACGTCCGGTAACGGCGGCCTAACTGCGACGGAGCACCAGGTAGCTAGAATGATGGAGGAGGATATGGGGTCCGCCATGCAGTATTTGCAAGGGAAAGGCCTCTGCTTGATGCCCATTTCTCTTGCCACTGCGATTTCTACTGCCACGTGTCATTCGAGGAACCCCGTCATTAGTGGCATCTTGTCCGACGTGGAAGGACCATCCTCCCCTAACATGTCCGCTCTGACCGTCCAGTCAGCAACCTTAGTCAACGGCATTAGCGACCTCACCGTCAAAGACGCCGCTTCCATTTCAAAGCCATGA | 1353 | 52.4 | MQPSSREMNQELLSDHLQIQPSNFLLHHTSHFDPSSSHDDFLGQMFSTIPSSTWPDLNPAINSVITGGSSMLRDFSDETPLPNPENGGYSYDESVNLPSKLRSHQISGSSPAVKAAAMMLQQHFLMSRGVAGAGDGNSSGLLPMPLSMEPPQDEVTDGLSTFKSHNPVMANFILQGGDQTRYSGFAAPTLNHPQHFQPPQVYPTQRSQNHGTSGSAINQVPAGGSNGATAGQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNTNKLIICQLQTDKASMLDEIIDYVKFLQLQVKVLSMSRLGCAAAVAPLVADVSSEGGGDCVRTGGNGGELGRPGGAQTTSGNGGLTATEHQVARMMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPVISGILSDVEGPSSPNMSALTVQSATLVNGISDLTVKDAASISKP | 450 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2675360 | 2677812 | + | Bma000492.2 | Bma01g00324 | 74841 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma01g00324 | 450 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 30 | 409 | - | - | |
| Bma01g00324 | 450 | Pfam | Helix-loop-helix DNA-binding domain | 248 | 300 | IPR011598 | GO:0046983 | |
| Bma01g00324 | 450 | SMART | finulus | 249 | 305 | IPR011598 | GO:0046983 | |
| Bma01g00324 | 450 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 241 | 312 | IPR036638 | GO:0046983 | |
| Bma01g00324 | 450 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 243 | 299 | IPR011598 | GO:0046983 | |
| Bma01g00324 | 450 | MobiDBLite | consensus disorder prediction | 193 | 232 | - | - | |
| Bma01g00324 | 450 | MobiDBLite | consensus disorder prediction | 336 | 357 | - | - | |
| Bma01g00324 | 450 | PANTHER | TRANSCRIPTION FACTOR BHLH69 | 30 | 409 | - | - | |
| Bma01g00324 | 450 | MobiDBLite | consensus disorder prediction | 185 | 247 | - | - | |
| Bma01g00324 | 450 | Gene3D | - | 240 | 317 | IPR036638 | GO:0046983 | |
| Bma01g00324 | 450 | MobiDBLite | consensus disorder prediction | 73 | 95 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g00324 | Bma-Chr1:2675360 | Bma09g00617 | Bma-Chr9:43393282 | 4.37E-57 | dispersed | |
| Bma01g00324 | Bma-Chr1:2675360 | Bma14g01254 | Bma-Chr14:20440056 | 1.94E-55 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 56632 | PF00010 | HLH | 1.40E-07 | No_clan | Bma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma01g00324 | - | - | qsu:111987215 | 452.21 |