Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00327 CCCCATAAAGAACTTACATCAAGTGGAACAGCCAAGGAAGTTCAGCCTAAGATCAAATCTGAATTTCAATTCTCCGAACGCTGTACGCCTCCATCAGAACTTTTGCCGTCATCACGCTCCATAACTTCTGCCACTGATCTGACTTTGAAGAATAAAAAAGTGTTTCAGCCTAAGAATAACGGTGATTACAAACCTGGACTCAACCTGCAAAATGCACCTGATCTTAGAATTGGGTCTGCTTTTGCTACCGTTAAGATACCGGCTTCTGATGGCTACAACTGGAGAAAATATGGCCAGAAAGAAGTCAAGAGTCCTAAAGGTTTTCGAAGCTATTATCGGTGTTCAAACACCGAGTGCTGTGCTAAAAAGATTGAATGCAGTGACCACTTAGGTTGCATGACAGAAATTGTTTATAAAAGTGAACATTGTCATGATCCTCCTATGAAGATTAACAACACGAGGCAAAGTAAACGGCCATCATCAAGTGAAGCTACCCATTACAATGTTGGTGCAGTTCATTCCAGGACTAGGCTTGAAGATTTCAATCTAACCACATCTTCAAAGGAACCTAGAGCAGAAACTCCCTCAACTTCTGAAGGAAAACAACAAATGACACGCAACGATGATGAAATTGTTGAAACTTCAATCAAAGAAGAACATGACAATGGATCCGAACCCAAACAACGGCAAGAACGTGAGATGGAGTATTCAGATTCTCTTAAAGCTGGAAAAAAACATAAATTTCTTGTTGAAGCTGTTTGTGAAGAGGGCACCTTCAGTGATGGATACCGGTGGCGTAAGTATGGGCAAAAAATGGTGAAGGGAAATCCTCATCCTAGAAACTACTACAGATGCACCTCGGCTGGCTGCCCCGTTCGTAAGCACACAATAACAGCTATAGATAATCCATGCACGATCACTATGGCTTACAAAGGGACGCATGATCATGAGATGCCAGTGCCGAGGAAACGAAGTAGCATACCTCCTATTGCATCCATTGCTTCTTTAAGAAGGGAGAAAGTTTTGCGTATTTTCAAATTGAATACCGGACAAGATGATCACGCAATAATGTTTTTGGAGGATTATCTAAAGCAGATGGAACATGTCGTATTAAGATTTGAAGAACGGAAGCATGGTGAAGTTGAAGTTTTTGGGTGGTTCAAGACGCATGTTATTGACCATAAACTGGAACCTAGTATTGGACACGAGGAACTTTGTAGACTCTTATCTCTTGGGGGAAAGGTGAAAGATGAACATATCTCCCTATTAATCAATGCCGGGCTCCTCGTTCGCCAACTGATTGATCCGAGCATGTACTGGTTCGCAATTCCTAATATTGGTTCAATACTCAAGGGTCTGTCCCAGGGAAGAAAGGAACTTCTATCACTTTTAAACCGAAGCAGATACAAGGAAATGCTAGTGGCCTCTTTGGAGAGGAAACGACTCCGACTATCTCCGCTTGATATGAGGTTCCATATCCGAGATTTGATTGGCTCAGGTCGAGTTAAAACCGTCCCAACACCGATTGGCTTGGTAATTCAAATACAGAAAGATTATTGA 1560 41.99 PHKELTSSGTAKEVQPKIKSEFQFSERCTPPSELLPSSRSITSATDLTLKNKKVFQPKNNGDYKPGLNLQNAPDLRIGSAFATVKIPASDGYNWRKYGQKEVKSPKGFRSYYRCSNTECCAKKIECSDHLGCMTEIVYKSEHCHDPPMKINNTRQSKRPSSSEATHYNVGAVHSRTRLEDFNLTTSSKEPRAETPSTSEGKQQMTRNDDEIVETSIKEEHDNGSEPKQRQEREMEYSDSLKAGKKHKFLVEAVCEEGTFSDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHTITAIDNPCTITMAYKGTHDHEMPVPRKRSSIPPIASIASLRREKVLRIFKLNTGQDDHAIMFLEDYLKQMEHVVLRFEERKHGEVEVFGWFKTHVIDHKLEPSIGHEELCRLLSLGGKVKDEHISLLINAGLLVRQLIDPSMYWFAIPNIGSILKGLSQGRKELLSLLNRSRYKEMLVASLERKRLRLSPLDMRFHIRDLIGSGRVKTVPTPIGLVIQIQKDY 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2685807 2695766 + Bma000495.1 Bma01g00327 74844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00327 519 Gene3D WRKY domain 80 148 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g00327 519 Gene3D WRKY domain 244 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g00327 519 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 2 334 IPR044810 GO:0003700
Bma01g00327 519 SUPERFAMILY WRKY DNA-binding domain 87 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g00327 519 ProSiteProfiles WRKY domain profile. 89 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g00327 519 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 2 334 - -
Bma01g00327 519 Pfam WRKY DNA -binding domain 90 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g00327 519 Pfam WRKY DNA -binding domain 261 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g00327 519 MobiDBLite consensus disorder prediction 203 239 - -
Bma01g00327 519 SUPERFAMILY WRKY DNA-binding domain 253 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g00327 519 MobiDBLite consensus disorder prediction 149 169 - -
Bma01g00327 519 Pfam Serine-threonine protein kinase 19 332 514 IPR018865 -
Bma01g00327 519 ProSiteProfiles WRKY domain profile. 254 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g00327 519 SMART WRKY_cls 88 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g00327 519 SMART WRKY_cls 259 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g00327 519 MobiDBLite consensus disorder prediction 178 202 - -
Bma01g00327 519 MobiDBLite consensus disorder prediction 143 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00327 Bma11g00638 CCT
Bma01g00327 Bma07g00734 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00327 Bma-Chr1:2685807 Bma11g00638 Bma-Chr11:11028394 5.60E-84 dispersed
Bma01g00327 Bma-Chr1:2685807 Bma07g00734 Bma-Chr7:19462514 2.22E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56633 PF10494 Stk19 2.00E-35 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00327 - K08880 qlo:115977254 318.161