Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00348 ATGTTTCATTTCCACATACTTCCCCAAGCGCTGTGGGATTGTGACGACCCCCTTTTTACGACCCGTCACCTTCCGGTTCGCCCGCGCGGACGTACCGCCATCCGGGTTCCGGTTCGTGCAGCCATCGTACCATACTTACAGATCCGGGTCATCACAATCACCCCCCCTCGGGGGCCCAACGTCCTCGTTGGCCACAATTCCGGTTGGGTACAGGCTCTGATACCATTTGTAACGACCCCGTTCCCAGCAAGATATTCGGCAATCGAGGACAGTTCCATTGATTTTGGCGACTTTTTCAAAGGTCCATTGCCTGGCAAATTTCTCAAGCTATTGGGCTATTTAGCGTTATCCAGGCTTGGAATATATGTACCACTTGGTGGGGTAAATAGAGAGGCTTTTGTCGGAAATTTGGATCAGAACAGTTTATTGAGCACATTGGATTCATTTTCTGGAGGGGGAATTGGAAGATTAGGAGTATGCTCACTTGGTATTGTTCCTTTCATTAATGCTTCGATTGTCTTCCAACTTCTGGCTCAGATCTATCCGAAGTTGCAGGAGCTTCAGAAAAGAGAAGGAGAAGCTGGAAGGAAGAAGATTCTTCAGTACACTCGATATGCTTCAGTTGGATTCGCCATTGTACAAGCAATTGGTCAAGTACTATTTCTCCGCCCCTATGCCAATGACTTCAGTACACAGTGGGTTCTGTCCTCAGTCATTTTACTGACACTTGGCTCTGTTTTAACGACATATATTGGAGAGCGAATCACAGACTTGAAACTTGGAAACGGCACGTCACTTTTAATTTTCACGAGCATTATCTCCTACTTACCAGCATCTTTGGGTAGGACAACAGCACAGGCATTTCAGGATGGTAACTACATTGGACTTCTTGCCATTCTTGCATCCTTTTTTCTGTTGGTTCTTGGTATTGTTTATGTTCAGGAAGCGGAAAGGAAAATTCCTATTAACTATGCATCAAGATATACAAGTAGAACTGGAGGGCTTGAAAGGTCTGCTTATCTACCCTTCAAGGTGAATAGCTCTGGAGTTATGCCTATCATATTTTCAACGTCGTCATTAGCACTTCCGGGTACACTTGCACGTTTCACAGGCTTAGCTGCTCTAAAGAAGGCAGCAATTTCTTTAAATCCCGGAGGTTCTCTTTATCTCCCCACCAACATTCTTCTGATAGCCTTCTTCAACTACTACTACACTTTCCTCCAGCTGGACCCTGATGATGTGAGTGAACAGTTGAAGCGCCAAGGTGCTTCAATTCCACTCGTCCGCCCTGGTAAAAGCACCGCTGCATTCATTAAAACGGTCCTAAGTCGAATATCAGTTCTCGGATCAGCCTTCTTGGCAATTCTTGCTGCTGGGCCCGCTGTGATTGAGCAAACTACACATCTCACTGCATTTCGAGGTTTCGCAGGCACGTCTGTTCTCATCCTTGTTGGTTGTGCTACTGACACTGCAAGGAAAGTGCAGGCTGAGATAATATCCCAGAAGTACAAGAACATCGAGCTATACGACTTCGATAAATACGGCTCCTAA 1551 45.97 MFHFHILPQALWDCDDPLFTTRHLPVRPRGRTAIRVPVRAAIVPYLQIRVITITPPRGPNVLVGHNSGWVQALIPFVTTPFPARYSAIEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYVPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGVCSLGIVPFINASIVFQLLAQIYPKLQELQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYANDFSTQWVLSSVILLTLGSVLTTYIGERITDLKLGNGTSLLIFTSIISYLPASLGRTTAQAFQDGNYIGLLAILASFFLLVLGIVYVQEAERKIPINYASRYTSRTGGLERSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLAALKKAAISLNPGGSLYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFIKTVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIELYDFDKYGS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2873765 2881374 - Bma030182 Bma01g00348 74865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00348 516 Gene3D SecY subunit domain 98 503 IPR023201 -
Bma01g00348 516 ProSitePatterns Protein secY signature 1. 158 177 IPR030659 -
Bma01g00348 516 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 86 512 - -
Bma01g00348 516 Hamap Protein translocase subunit SecY [secY]. 95 507 IPR026593 -
Bma01g00348 516 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 106 503 IPR002208 GO:0015031|GO:0016020
Bma01g00348 516 PIRSF SecY_Sec61alpha 84 515 IPR002208 GO:0015031|GO:0016020
Bma01g00348 516 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 86 512 IPR002208 GO:0015031|GO:0016020
Bma01g00348 516 SUPERFAMILY Preprotein translocase SecY subunit 99 497 IPR023201 -
Bma01g00348 516 ProSitePatterns Protein secY signature 2. 250 267 IPR030659 -
Bma01g00348 516 Pfam SecY 159 490 IPR002208 GO:0015031|GO:0016020
Bma01g00348 516 PRINTS Preprotein translocase SecY subunit signature 348 367 - -
Bma01g00348 516 PRINTS Preprotein translocase SecY subunit signature 157 177 - -
Bma01g00348 516 PRINTS Preprotein translocase SecY subunit signature 476 494 - -
Bma01g00348 516 PRINTS Preprotein translocase SecY subunit signature 257 280 - -
Bma01g00348 516 PRINTS Preprotein translocase SecY subunit signature 442 460 - -
Bma01g00348 516 PRINTS Preprotein translocase SecY subunit signature 107 125 - -
Bma01g00348 516 PRINTS Preprotein translocase SecY subunit signature 231 256 - -
Bma01g00348 516 PRINTS Preprotein translocase SecY subunit signature 199 222 - -
Bma01g00348 516 PRINTS Preprotein translocase SecY subunit signature 387 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00348 Bma-Chr1:2873765 Bma13g00024 Bma-Chr13:330539 3.15E-41 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00348 K10956 - csin:114311491 773.467