Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00360 ATGGTGCAATCAAAGAAGTTCAGAGGAGTCAGGCAGAGACACTGGGGATCATGGGTATCAGAAATTCGCCATCCATTGCTGAAAAGAAGGGTCTGGCTAGGAACTTTCGAGACTGCAGAAGAAGCAGCCAGAACTTACGATCAAGCAGCAATTTTGATGAGTGGAAGAAACGCGAAAACGAATTTTCCAGTCTCTCAAGCTCCGACCAGCGACTCAGAAAAAAACAAGCTTTCTCCGTTATCGCCCAAGAGTTTGTCAGAAATTCTCCATGCAAAGCTGAGAAAATTCAGCAAAACACCTTCTCCTTCAATGACTTGTCTGAGGTTAGACAACGAAAATTCTCATATCGGAGTTTGGCAAAAGCGAGCTGGGCAGAGTTCGATCTCAAACTCCAATTGGGTTATGACCGTCGAGTTCGGAAAGAAGAACCCTGAACAGAATTCTTCGTCTTGTACATTGTCTTCTGACCAGCTTCCGCCATTGGAGGCTATCCCCGAGCTTCCGCTAGAGATGAGTGAGGAAGAAAGAGTTGCTTTGCAAATGATCGAGGAATTGCTCATTGGAAACAATCCAAGCCCTTCAATTCAGTGTCATGAACAAGACGCAGGTCCTTATTTCTACATTTGA 627 44.98 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARTYDQAAILMSGRNAKTNFPVSQAPTSDSEKNKLSPLSPKSLSEILHAKLRKFSKTPSPSMTCLRLDNENSHIGVWQKRAGQSSISNSNWVMTVEFGKKNPEQNSSSCTLSSDQLPPLEAIPELPLEMSEEERVALQMIEELLIGNNPSPSIQCHEQDAGPYFYI 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2966317 2967062 - Bma000533.1 Bma01g00360 74877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00360 208 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Bma01g00360 208 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bma01g00360 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 197 - -
Bma01g00360 208 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Bma01g00360 208 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Bma01g00360 208 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 197 - -
Bma01g00360 208 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bma01g00360 208 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Bma01g00360 208 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bma01g00360 208 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00360 Bma-Chr1:2966317 Bma06g01066 Bma-Chr6:47475190 8.08E-121 dispersed
Bma04g00066 Bma-Chr4:589462 Bma01g00360 Bma-Chr1:2966317 1.25E-82 transposed
Bma01g00360 Bma-Chr1:2966317 Bma01g00437 Bma-Chr1:3640282 7.10E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56637 PF00847 AP2 6.40E-12 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00360 - - qsu:112002896 282.337