Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00365 | ATGGGAAGTCCTTCAGCAACCCCGCCTTCACTTCCCACCTTCTCTCCCGGACTTAGTCCTGGATCAACTGATGAGACGCCACGTGTGAAGTTTCTATGTAGTTTTCTAGGAAGTATAATGTCTCGCCCACAAGACGGAAAGCTTCGCTATGTTGGTGGAGAGACTCGAATTGTTAGTGTGTCCAGAGACATTACTTACGAGGGGTTAATGAGTAAGATGAAAGAAATTTATGAAGGAGCATCGCTTCTTAAGTATCAGCAACCAGATGAAGATCTTGATGCTCTTGTCTCTGTTGTGAATGATGATGATGTAATTAATATGATGGAGGAATATGACAAATTGGGTTCAGGAGATGGATTCACTAAGCTGAGGGTGTTTTTATCTTCTCATTCTGATCTAGATGGTTCTGCTTTTATTGATGGAGATGAGAGGGATAATGAGAGAAGATATGTCGATGCTCTTAATAATTTAAACGATGCTACTGATTTTAGGAAACAACTGCTTCCTGATTCTCCTGTGATTGGCCCTCTCGAGGATATATATGGGTCTGACCGGTATTTCAATCCATCAGGTCTTGATGGAGCTAATGCCTTAGGAGGATCAGAACAGGAAGCTGATAATGACTATTTAAAACCATCAAAAATTGAGCCAACGAAGGCTGAGGCAGAAGCCATTGCCAGGGGATTGCAGACAATTAAAAATGATGATCTGGAGGAGATCCGAGCACTTGGATCTGGGACATATGGGGCTGTTTATCATGGAAAATGGAGAGGTTCTGATGTAGCAATAAAGAGAATTAAAGCCAGTTGCTTTGCTGGGCGGCCGTCTGAAAGAGAACGCTTGATTGCAGATTTCTGGAAGGAGGCTTTGATATTAAGTTCTTTACACCACCCAAATGTTGTTTCCTTTTATGGCATTGTCCGTGATGGTCCTGATGGATCCTTAGCGACTGTAACAGAGTTCATGATAAATGGATCCTTAAAACAGTTTTTGCAGAAGAAGGACAGAACCATTGATCGTCGGAAGAGACTCATCATTGCTATGGACGCATCATTTGGAATGGAGTATTTGCATGGAAAGAGCATTGTACATTTTGATTTGAAATGTGAAAATCTTTTAGTGAACATGAGGGATCCACAAAGACCCGTATGCAAGATTGGCGATTTGGGCTTATCAAAGGTGAGACAGCACACTTTAGTCTCAGGGGGTGTTCGGGGAACTTTACCATGGATGGCTCCCGAGCTTCTTAGTGGAAAAAGTAACATGGTTACTGAAAAGGTGAAGCTACCTGTCAGATTATCAAATTTTGAAGAAGAGTTGAAGGGTGCCGTTGCCCTCATTTTTGCAAACAAGCAGGATCTTCCTGGTGCGCTTGATGATGCTGCGGTAACCGAGGCCTTAGAGTTGCACAAGATAAAAAACCGTCAATGGTCCATTTTTAAAACTTCTGCTATAAAAGGAGAAGGTCTCTTTGAGGGTTTGGATTGGTAA | 1491 | 42.32 | MGSPSATPPSLPTFSPGLSPGSTDETPRVKFLCSFLGSIMSRPQDGKLRYVGGETRIVSVSRDITYEGLMSKMKEIYEGASLLKYQQPDEDLDALVSVVNDDDVINMMEEYDKLGSGDGFTKLRVFLSSHSDLDGSAFIDGDERDNERRYVDALNNLNDATDFRKQLLPDSPVIGPLEDIYGSDRYFNPSGLDGANALGGSEQEADNDYLKPSKIEPTKAEAEAIARGLQTIKNDDLEEIRALGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLQKKDRTIDRRKRLIIAMDASFGMEYLHGKSIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKVKLPVRLSNFEEELKGAVALIFANKQDLPGALDDAAVTEALELHKIKNRQWSIFKTSAIKGEGLFEGLDW | 496 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3011714 | 3020678 | - | Bma000539.2 | Bma01g00365 | 74882 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00365 | 496 | Gene3D | Transferase(Phosphotransferase) domain 1 | 323 | 423 | - | - | |
Bma01g00365 | 496 | Pfam | ADP-ribosylation factor family | 437 | 496 | IPR006689 | GO:0003924|GO:0005525 | |
Bma01g00365 | 496 | SUPERFAMILY | Protein kinase-like (PK-like) | 225 | 423 | IPR011009 | - | |
Bma01g00365 | 496 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Bma01g00365 | 496 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 362 | 374 | IPR008271 | GO:0004672|GO:0006468 | |
Bma01g00365 | 496 | ProSitePatterns | Protein kinases ATP-binding region signature. | 243 | 264 | IPR017441 | GO:0005524 | |
Bma01g00365 | 496 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 20 | 164 | - | - | |
Bma01g00365 | 496 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 195 | 427 | - | - | |
Bma01g00365 | 496 | Pfam | PB1 domain | 44 | 125 | IPR000270 | GO:0005515 | |
Bma01g00365 | 496 | Gene3D | Phosphorylase Kinase; domain 1 | 222 | 322 | - | - | |
Bma01g00365 | 496 | SMART | arf_sub_2 | 319 | 496 | - | - | |
Bma01g00365 | 496 | CDD | PB1_UP2 | 32 | 127 | - | - | |
Bma01g00365 | 496 | SUPERFAMILY | CAD & PB1 domains | 45 | 133 | - | - | |
Bma01g00365 | 496 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 438 | 496 | IPR027417 | - | |
Bma01g00365 | 496 | ProSiteProfiles | Protein kinase domain profile. | 237 | 496 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00365 | 496 | PANTHER | KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN | 20 | 164 | - | - | |
Bma01g00365 | 496 | PANTHER | KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN | 195 | 427 | - | - | |
Bma01g00365 | 496 | SMART | PB1_new | 43 | 128 | IPR000270 | GO:0005515 | |
Bma01g00365 | 496 | SMART | serkin_6 | 237 | 473 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00365 | 496 | Pfam | Protein tyrosine and serine/threonine kinase | 238 | 420 | IPR001245 | GO:0004672|GO:0006468 | |
Bma01g00365 | 496 | Gene3D | - | 47 | 131 | - | - | |
Bma01g00365 | 496 | Gene3D | - | 424 | 496 | IPR027417 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g00365 | Bma06g00920 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00365 | Bma-Chr1:3011714 | Bma06g00066 | Bma-Chr6:1049558 | 1.93E-31 | dispersed | |
Bma14g01817 | Bma-Chr14:39082783 | Bma01g00365 | Bma-Chr1:3011714 | 4.16E-27 | dispersed | |
Bma02g00726 | Bma-Chr2:35511886 | Bma01g00365 | Bma-Chr1:3011714 | 3.01E-78 | transposed | |
Bma11g00625 | Bma-Chr11:9837443 | Bma01g00365 | Bma-Chr1:3011714 | 1.07E-15 | transposed | |
Bma12g00582 | Bma-Chr12:25424967 | Bma01g00365 | Bma-Chr1:3011714 | 1.26E-30 | transposed | |
Bma01g00365 | Bma-Chr1:3011714 | Bma06g00920 | Bma-Chr6:44450177 | 3.46E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66251 | PF07714 | PK_Tyr_Ser-Thr | 1.60E-35 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00365 | - | - | tcc:18589217 | 442.195 |