Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00365 ATGGGAAGTCCTTCAGCAACCCCGCCTTCACTTCCCACCTTCTCTCCCGGACTTAGTCCTGGATCAACTGATGAGACGCCACGTGTGAAGTTTCTATGTAGTTTTCTAGGAAGTATAATGTCTCGCCCACAAGACGGAAAGCTTCGCTATGTTGGTGGAGAGACTCGAATTGTTAGTGTGTCCAGAGACATTACTTACGAGGGGTTAATGAGTAAGATGAAAGAAATTTATGAAGGAGCATCGCTTCTTAAGTATCAGCAACCAGATGAAGATCTTGATGCTCTTGTCTCTGTTGTGAATGATGATGATGTAATTAATATGATGGAGGAATATGACAAATTGGGTTCAGGAGATGGATTCACTAAGCTGAGGGTGTTTTTATCTTCTCATTCTGATCTAGATGGTTCTGCTTTTATTGATGGAGATGAGAGGGATAATGAGAGAAGATATGTCGATGCTCTTAATAATTTAAACGATGCTACTGATTTTAGGAAACAACTGCTTCCTGATTCTCCTGTGATTGGCCCTCTCGAGGATATATATGGGTCTGACCGGTATTTCAATCCATCAGGTCTTGATGGAGCTAATGCCTTAGGAGGATCAGAACAGGAAGCTGATAATGACTATTTAAAACCATCAAAAATTGAGCCAACGAAGGCTGAGGCAGAAGCCATTGCCAGGGGATTGCAGACAATTAAAAATGATGATCTGGAGGAGATCCGAGCACTTGGATCTGGGACATATGGGGCTGTTTATCATGGAAAATGGAGAGGTTCTGATGTAGCAATAAAGAGAATTAAAGCCAGTTGCTTTGCTGGGCGGCCGTCTGAAAGAGAACGCTTGATTGCAGATTTCTGGAAGGAGGCTTTGATATTAAGTTCTTTACACCACCCAAATGTTGTTTCCTTTTATGGCATTGTCCGTGATGGTCCTGATGGATCCTTAGCGACTGTAACAGAGTTCATGATAAATGGATCCTTAAAACAGTTTTTGCAGAAGAAGGACAGAACCATTGATCGTCGGAAGAGACTCATCATTGCTATGGACGCATCATTTGGAATGGAGTATTTGCATGGAAAGAGCATTGTACATTTTGATTTGAAATGTGAAAATCTTTTAGTGAACATGAGGGATCCACAAAGACCCGTATGCAAGATTGGCGATTTGGGCTTATCAAAGGTGAGACAGCACACTTTAGTCTCAGGGGGTGTTCGGGGAACTTTACCATGGATGGCTCCCGAGCTTCTTAGTGGAAAAAGTAACATGGTTACTGAAAAGGTGAAGCTACCTGTCAGATTATCAAATTTTGAAGAAGAGTTGAAGGGTGCCGTTGCCCTCATTTTTGCAAACAAGCAGGATCTTCCTGGTGCGCTTGATGATGCTGCGGTAACCGAGGCCTTAGAGTTGCACAAGATAAAAAACCGTCAATGGTCCATTTTTAAAACTTCTGCTATAAAAGGAGAAGGTCTCTTTGAGGGTTTGGATTGGTAA 1491 42.32 MGSPSATPPSLPTFSPGLSPGSTDETPRVKFLCSFLGSIMSRPQDGKLRYVGGETRIVSVSRDITYEGLMSKMKEIYEGASLLKYQQPDEDLDALVSVVNDDDVINMMEEYDKLGSGDGFTKLRVFLSSHSDLDGSAFIDGDERDNERRYVDALNNLNDATDFRKQLLPDSPVIGPLEDIYGSDRYFNPSGLDGANALGGSEQEADNDYLKPSKIEPTKAEAEAIARGLQTIKNDDLEEIRALGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLQKKDRTIDRRKRLIIAMDASFGMEYLHGKSIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKVKLPVRLSNFEEELKGAVALIFANKQDLPGALDDAAVTEALELHKIKNRQWSIFKTSAIKGEGLFEGLDW 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3011714 3020678 - Bma000539.2 Bma01g00365 74882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00365 496 Gene3D Transferase(Phosphotransferase) domain 1 323 423 - -
Bma01g00365 496 Pfam ADP-ribosylation factor family 437 496 IPR006689 GO:0003924|GO:0005525
Bma01g00365 496 SUPERFAMILY Protein kinase-like (PK-like) 225 423 IPR011009 -
Bma01g00365 496 MobiDBLite consensus disorder prediction 1 25 - -
Bma01g00365 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Bma01g00365 496 ProSitePatterns Protein kinases ATP-binding region signature. 243 264 IPR017441 GO:0005524
Bma01g00365 496 PANTHER SERINE-THREONINE PROTEIN KINASE 20 164 - -
Bma01g00365 496 PANTHER SERINE-THREONINE PROTEIN KINASE 195 427 - -
Bma01g00365 496 Pfam PB1 domain 44 125 IPR000270 GO:0005515
Bma01g00365 496 Gene3D Phosphorylase Kinase; domain 1 222 322 - -
Bma01g00365 496 SMART arf_sub_2 319 496 - -
Bma01g00365 496 CDD PB1_UP2 32 127 - -
Bma01g00365 496 SUPERFAMILY CAD & PB1 domains 45 133 - -
Bma01g00365 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 496 IPR027417 -
Bma01g00365 496 ProSiteProfiles Protein kinase domain profile. 237 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00365 496 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 20 164 - -
Bma01g00365 496 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 195 427 - -
Bma01g00365 496 SMART PB1_new 43 128 IPR000270 GO:0005515
Bma01g00365 496 SMART serkin_6 237 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00365 496 Pfam Protein tyrosine and serine/threonine kinase 238 420 IPR001245 GO:0004672|GO:0006468
Bma01g00365 496 Gene3D - 47 131 - -
Bma01g00365 496 Gene3D - 424 496 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00365 Bma06g00920 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00365 Bma-Chr1:3011714 Bma06g00066 Bma-Chr6:1049558 1.93E-31 dispersed
Bma14g01817 Bma-Chr14:39082783 Bma01g00365 Bma-Chr1:3011714 4.16E-27 dispersed
Bma02g00726 Bma-Chr2:35511886 Bma01g00365 Bma-Chr1:3011714 3.01E-78 transposed
Bma11g00625 Bma-Chr11:9837443 Bma01g00365 Bma-Chr1:3011714 1.07E-15 transposed
Bma12g00582 Bma-Chr12:25424967 Bma01g00365 Bma-Chr1:3011714 1.26E-30 transposed
Bma01g00365 Bma-Chr1:3011714 Bma06g00920 Bma-Chr6:44450177 3.46E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66251 PF07714 PK_Tyr_Ser-Thr 1.60E-35 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00365 - - tcc:18589217 442.195