Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00390 ATGGTCTGTGTGTTCCTAATTTGTGCCTACATCTATCCACTCGTTAACGGTGGAGCCTGTTATATACTTTCATCTAAAGGTTGTAATGTTATTACCAACTGGCTTCCTCCTGCTCCTGCAAGAGAATATACTGATCAAGAGATTGCATCCCGTATTGTTTTTAAGGAGATTTTGAATACACCTTCTGTCCGTTCCAAAACTCCTAAAATTGCTTTCATGTTTTTGACTCCTGGTTCCCTGCCATTTGAGAAGTTGTGGGATAAGTTCTTAACGGGTAATGAAGACAGATTCTCCATTTATGTACATGCATCTAAGGAGAAACCTGTGCACTGGAGCCCTCATTTCTTGAATAGAGATATTCGTAGTGACCAGGTAATTTGGGGTAAAATTTCTATGGTTGATGCCGAAAGGCGATTGTTGTCAATTGCACTCCAAGATCCCGATAACCATCACTTTGTTTTACTTTCTGATAGTTGTGTACCACTGCATAGTTTTGACTACATCTATCAGTATCTAATGTATACGAACATCAGCTATGTTGACTGCTTTGATGATCCTGGCCCACATGGGAATGGAAGGTACTCTGAGCACATGTTACCTGAAATTGAGATGAAACATTTTAGAAAAGGTGCACAGTGGTTCTCGTTGAAACGGCAGCATGCTTTAATAGTTCTGGCTGACAATCTTTACTACTCGAAATTCCGGGACTACTGCCAGCCGGGTCTGGACGGAAGGAACTGTATCGCCGATGAACATTACATGCCAACCTTTTTCAACATGATTGATCCTGGAGGGATCGCGAATTGGTCTGTAACTCATGTAGATTGGTCAGAAAAAAAGTGGCATCCAAAATCATACGGGGCCGAGGATGTTACTAGCGAGCTTCTGATGAATATTACGTCAATTGATGTTAGCGTGCATGTGACAAGTGATGAAGAGAGCAAAGTCCTGATGTGGCCTTGTTTATGGAACGGTCAACAGCGGCCTTGTTACTTATTTGCAAGGAAATTCTACCCTGATGCTCTCGACAACTTGTTGTCCCTTTTCTCCAACTATTCAACAATTTGA 1068 41.76 MVCVFLICAYIYPLVNGGACYILSSKGCNVITNWLPPAPAREYTDQEIASRIVFKEILNTPSVRSKTPKIAFMFLTPGSLPFEKLWDKFLTGNEDRFSIYVHASKEKPVHWSPHFLNRDIRSDQVIWGKISMVDAERRLLSIALQDPDNHHFVLLSDSCVPLHSFDYIYQYLMYTNISYVDCFDDPGPHGNGRYSEHMLPEIEMKHFRKGAQWFSLKRQHALIVLADNLYYSKFRDYCQPGLDGRNCIADEHYMPTFFNMIDPGGIANWSVTHVDWSEKKWHPKSYGAEDVTSELLMNITSIDVSVHVTSDEESKVLMWPCLWNGQQRPCYLFARKFYPDALDNLLSLFSNYSTI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3216533 3220451 + Bma000564.1 Bma01g00390 74907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00390 355 Pfam Core-2/I-Branching enzyme 70 299 IPR003406 GO:0016020|GO:0016757
Bma01g00390 355 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 1 354 IPR044174 GO:0016757
Bma01g00390 355 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 1 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00390 - - - csv:101222732 621.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00390 Bma-Chr1:3216533 Bma12g00030 Bma-Chr12:874750 3.50E-77 dispersed
Bma13g00537 Bma-Chr13:11257824 Bma01g00390 Bma-Chr1:3216533 1.87E-57 transposed
Bma01g00390 Bma-Chr1:3216533 Bma06g01019 Bma-Chr6:46834403 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g338 Blo01g00507 . Bda01g02064 Bda11g00105 Bpe13g01106 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0819 Cone6ag0432 . . . . . . . . Bda11g00105 . Bpe02g02071 Bma01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000821 3 8 2 2 3 2 4 2 2 2 2 2 4 3 3 4 2 5 5 2 3 3 2 2 3 2 2 6 4 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00390 Bma_Chr01 FPKM 36.27528 36.274597 26.376486 25.440727 31.647295 37.325283 31.268141 36.760677 37.236725 34.58395