Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00392 ATGGAAGCCCCAAGAAAAAAGGCTGCCCGCCAAGACTCTAAAAAATCTAATTCTAAAACAGAGTCTGGGAGTGAGTTCATTGAATCATTGAAATTCAGAAGGGGCAGCAAAATATTCAAAAGTAAAAGGAAAAGACCAAGATCCAAAAGCAATGTACATAGATTGGATTCAAGCTTGATAGAAAAGGAAGGGGCTAAATCATTGAACAAGTGGACCAAGAAGAATTCTGACCTGGGTGGTAAAAAAAGTCAGATTAAACAACTGGAAACGAATTCCTTGAAGAAGAAGTCTAATTTTAGGTTCCAGGATAAAAAATCCTGCTCGAGCAAGTCTGAAGGGAAAGAAAACAATGTTGTTGGGGAACAAAACATGGATCACTTAAAGAAAAGAACGAGGAAAAAGAGGCAAACACGCTATGCAGAGCAAGACGAAGCCTGTCGCTTGCAGAGAAGAACTAGGTATCTAATGATCAAAATGAAGTTGGAGCAGAACCTCATTGACGCCTACTCTGGTGAAGGCTGGAAAGGCCAAAGTCGAGAAAAGATTAAGCCTGAAAATGAATTACAAAGAGCAAGAAAGCAGATTTTGAAATGCAAACTTGGAATTCGAGATGCAGTTCAGCAGCTAGATTCTCTGAGTTCAGTTGGATGCATTGAAGACTCTGTTATTGGTCCAGATGGATCCGTTTACCATGAACATATAATTTGTGCAAAATGCAAGTTGCGTGAAGCTTTTCCAGATAATGATATTATACTTTGTGATGGAACATGCAACTGCGCTTTCCACCAGAAATGTCTAGACCCACCTTTGGACACTAAACACATTCCTCCAGGAGATCAGGGCTGGTTTTGTAAATTTTGTGAGTGTAAGATGGATATACTAGAGGCAATGAATGCACATCTTGGCACCCATTTCCCAATGGATAGTCGTTGGGAGGATATTTTCAAGGAAGATGCTGCTTTTCGTGATGGTGGAAATTCACTATTCAATCAAGAAGAAGACTGGCCATCTGATGATTCAGAAGATGATGATTATAATCCAGAGAGAAGGGAAAAGAGCCACTGCGTTGATGAGATGGACAATAATGACAATGCTTCAGATCTCTTGAGCAGCTCTACAAGCTTGAGTTGGTCATTAGATGGTGAAGTCTTTTCTGGAAAGGATGGCATTGACTATGAAAATCTCTCTGTTCGTAGCCCTCTAGATTCTGATGAGTTCATTGAAGGCGAAGTTATTAGCGGGCGGAGACGGCGACATTCTGTTGATTATAGGAAGTTATATGATGAAATGTTTGGAAAGGAAGCTTCAATGTATGAACAAGCAAGTGAAGATGAAGATTGGGGTCCTGCAAAAAGAAAGAGGAGAGAGAAAGAGTCTGATGCAGCAAGCACCCTTATTACTCTTTATAAAAGTGAGCAAAAGACTCCAGCTCTAGGCACAGAAGTGAAAGATAAACTTCAAAACAAGACATCTTTCAGAATTCCTCGTCACGCGGTTCAGAAGCTTCGCCAAGTATTTGGAGAGAATGAACTTCCATCTAAAGCTGTCAAACAAAATCTTTCAGAAGAACTGGGCATCGATCCTGAGAAGGTCAACAAATGGTTCAAGAATGCACGATATGTTGCACTTAAGGCAAGAAAGGTAGAGGGAACAAAACCTTTACTATCTCCAAGTAAGTCAAAGGAATTTAATGTTGAAGCAGTGCAGAAAGATGATGGCGATAAATTAGCATCAAACAATGCTAAGAAGATTTCAAATAAAAAGCAGCACAAGAGAATCCTTCTTAGACCTTGCACCACTAACAAGGATGATGATTTGGAGATTGGTGAAGATGATGAGAGCTTGAAGAAGCTTTTAGAAGAAAGGATGAAGGAGAAGAAGAAGAAGAAAGGGAAGAAGGGGAGAGGAAGAGGAGGTGGATACGAAGAGGCAGAAAAAGAGATGGAAAGAGTGTGTAAAATTAAGCGTAGATTAGAAAATATGAAGCAGGTTTTACTCAGATTTACAAACACCAAAAAACCCAAGAAATCACATAAATCAACTCTGTTTCAACACACTACTTTTTATGTGCCTGTTGCTCAGTTGAAGGAGAAAACTTGA 2100 39.71 MEAPRKKAARQDSKKSNSKTESGSEFIESLKFRRGSKIFKSKRKRPRSKSNVHRLDSSLIEKEGAKSLNKWTKKNSDLGGKKSQIKQLETNSLKKKSNFRFQDKKSCSSKSEGKENNVVGEQNMDHLKKRTRKKRQTRYAEQDEACRLQRRTRYLMIKMKLEQNLIDAYSGEGWKGQSREKIKPENELQRARKQILKCKLGIRDAVQQLDSLSSVGCIEDSVIGPDGSVYHEHIICAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKHIPPGDQGWFCKFCECKMDILEAMNAHLGTHFPMDSRWEDIFKEDAAFRDGGNSLFNQEEDWPSDDSEDDDYNPERREKSHCVDEMDNNDNASDLLSSSTSLSWSLDGEVFSGKDGIDYENLSVRSPLDSDEFIEGEVISGRRRRHSVDYRKLYDEMFGKEASMYEQASEDEDWGPAKRKRREKESDAASTLITLYKSEQKTPALGTEVKDKLQNKTSFRIPRHAVQKLRQVFGENELPSKAVKQNLSEELGIDPEKVNKWFKNARYVALKARKVEGTKPLLSPSKSKEFNVEAVQKDDGDKLASNNAKKISNKKQHKRILLRPCTTNKDDDLEIGEDDESLKKLLEERMKEKKKKKGKKGRGRGGGYEEAEKEMERVCKIKRRLENMKQVLLRFTNTKKPKKSHKSTLFQHTTFYVPVAQLKEKT 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3227619 3232816 - Bma000566.1 Bma01g00392 74909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00392 699 MobiDBLite consensus disorder prediction 1 35 - -
Bma01g00392 699 Pfam PHD-finger 235 290 IPR019787 -
Bma01g00392 699 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Bma01g00392 699 Coils Coil 641 661 - -
Bma01g00392 699 CDD PHD_PRHA_like 236 287 IPR045876 -
Bma01g00392 699 CDD homeodomain 489 540 IPR001356 GO:0003677
Bma01g00392 699 Gene3D - 489 550 - -
Bma01g00392 699 MobiDBLite consensus disorder prediction 36 50 - -
Bma01g00392 699 SMART HOX_1 487 549 IPR001356 GO:0003677
Bma01g00392 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Bma01g00392 699 PANTHER POLYCOMB PROTEIN PCL 3 673 - -
Bma01g00392 699 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Bma01g00392 699 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 3 673 - -
Bma01g00392 699 SMART PHD_3 235 288 IPR001965 -
Bma01g00392 699 MobiDBLite consensus disorder prediction 99 135 - -
Bma01g00392 699 Pfam Homeodomain 496 539 IPR001356 GO:0003677
Bma01g00392 699 MobiDBLite consensus disorder prediction 1 58 - -
Bma01g00392 699 SUPERFAMILY FYVE/PHD zinc finger 226 292 IPR011011 -
Bma01g00392 699 ProSiteProfiles 'Homeobox' domain profile. 485 545 IPR001356 GO:0003677
Bma01g00392 699 MobiDBLite consensus disorder prediction 326 363 - -
Bma01g00392 699 SUPERFAMILY Homeodomain-like 486 544 IPR009057 -
Bma01g00392 699 MobiDBLite consensus disorder prediction 343 361 - -
Bma01g00392 699 MobiDBLite consensus disorder prediction 624 646 - -
Bma01g00392 699 MobiDBLite consensus disorder prediction 440 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00392 Bma-Chr1:3227619 Bma05g00672 Bma-Chr5:39309718 9.81E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56638 PF00628 PHD 3.30E-09 CL0390 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00392 - - qlo:115986711 738.028