Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00392 | ATGGAAGCCCCAAGAAAAAAGGCTGCCCGCCAAGACTCTAAAAAATCTAATTCTAAAACAGAGTCTGGGAGTGAGTTCATTGAATCATTGAAATTCAGAAGGGGCAGCAAAATATTCAAAAGTAAAAGGAAAAGACCAAGATCCAAAAGCAATGTACATAGATTGGATTCAAGCTTGATAGAAAAGGAAGGGGCTAAATCATTGAACAAGTGGACCAAGAAGAATTCTGACCTGGGTGGTAAAAAAAGTCAGATTAAACAACTGGAAACGAATTCCTTGAAGAAGAAGTCTAATTTTAGGTTCCAGGATAAAAAATCCTGCTCGAGCAAGTCTGAAGGGAAAGAAAACAATGTTGTTGGGGAACAAAACATGGATCACTTAAAGAAAAGAACGAGGAAAAAGAGGCAAACACGCTATGCAGAGCAAGACGAAGCCTGTCGCTTGCAGAGAAGAACTAGGTATCTAATGATCAAAATGAAGTTGGAGCAGAACCTCATTGACGCCTACTCTGGTGAAGGCTGGAAAGGCCAAAGTCGAGAAAAGATTAAGCCTGAAAATGAATTACAAAGAGCAAGAAAGCAGATTTTGAAATGCAAACTTGGAATTCGAGATGCAGTTCAGCAGCTAGATTCTCTGAGTTCAGTTGGATGCATTGAAGACTCTGTTATTGGTCCAGATGGATCCGTTTACCATGAACATATAATTTGTGCAAAATGCAAGTTGCGTGAAGCTTTTCCAGATAATGATATTATACTTTGTGATGGAACATGCAACTGCGCTTTCCACCAGAAATGTCTAGACCCACCTTTGGACACTAAACACATTCCTCCAGGAGATCAGGGCTGGTTTTGTAAATTTTGTGAGTGTAAGATGGATATACTAGAGGCAATGAATGCACATCTTGGCACCCATTTCCCAATGGATAGTCGTTGGGAGGATATTTTCAAGGAAGATGCTGCTTTTCGTGATGGTGGAAATTCACTATTCAATCAAGAAGAAGACTGGCCATCTGATGATTCAGAAGATGATGATTATAATCCAGAGAGAAGGGAAAAGAGCCACTGCGTTGATGAGATGGACAATAATGACAATGCTTCAGATCTCTTGAGCAGCTCTACAAGCTTGAGTTGGTCATTAGATGGTGAAGTCTTTTCTGGAAAGGATGGCATTGACTATGAAAATCTCTCTGTTCGTAGCCCTCTAGATTCTGATGAGTTCATTGAAGGCGAAGTTATTAGCGGGCGGAGACGGCGACATTCTGTTGATTATAGGAAGTTATATGATGAAATGTTTGGAAAGGAAGCTTCAATGTATGAACAAGCAAGTGAAGATGAAGATTGGGGTCCTGCAAAAAGAAAGAGGAGAGAGAAAGAGTCTGATGCAGCAAGCACCCTTATTACTCTTTATAAAAGTGAGCAAAAGACTCCAGCTCTAGGCACAGAAGTGAAAGATAAACTTCAAAACAAGACATCTTTCAGAATTCCTCGTCACGCGGTTCAGAAGCTTCGCCAAGTATTTGGAGAGAATGAACTTCCATCTAAAGCTGTCAAACAAAATCTTTCAGAAGAACTGGGCATCGATCCTGAGAAGGTCAACAAATGGTTCAAGAATGCACGATATGTTGCACTTAAGGCAAGAAAGGTAGAGGGAACAAAACCTTTACTATCTCCAAGTAAGTCAAAGGAATTTAATGTTGAAGCAGTGCAGAAAGATGATGGCGATAAATTAGCATCAAACAATGCTAAGAAGATTTCAAATAAAAAGCAGCACAAGAGAATCCTTCTTAGACCTTGCACCACTAACAAGGATGATGATTTGGAGATTGGTGAAGATGATGAGAGCTTGAAGAAGCTTTTAGAAGAAAGGATGAAGGAGAAGAAGAAGAAGAAAGGGAAGAAGGGGAGAGGAAGAGGAGGTGGATACGAAGAGGCAGAAAAAGAGATGGAAAGAGTGTGTAAAATTAAGCGTAGATTAGAAAATATGAAGCAGGTTTTACTCAGATTTACAAACACCAAAAAACCCAAGAAATCACATAAATCAACTCTGTTTCAACACACTACTTTTTATGTGCCTGTTGCTCAGTTGAAGGAGAAAACTTGA | 2100 | 39.71 | MEAPRKKAARQDSKKSNSKTESGSEFIESLKFRRGSKIFKSKRKRPRSKSNVHRLDSSLIEKEGAKSLNKWTKKNSDLGGKKSQIKQLETNSLKKKSNFRFQDKKSCSSKSEGKENNVVGEQNMDHLKKRTRKKRQTRYAEQDEACRLQRRTRYLMIKMKLEQNLIDAYSGEGWKGQSREKIKPENELQRARKQILKCKLGIRDAVQQLDSLSSVGCIEDSVIGPDGSVYHEHIICAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKHIPPGDQGWFCKFCECKMDILEAMNAHLGTHFPMDSRWEDIFKEDAAFRDGGNSLFNQEEDWPSDDSEDDDYNPERREKSHCVDEMDNNDNASDLLSSSTSLSWSLDGEVFSGKDGIDYENLSVRSPLDSDEFIEGEVISGRRRRHSVDYRKLYDEMFGKEASMYEQASEDEDWGPAKRKRREKESDAASTLITLYKSEQKTPALGTEVKDKLQNKTSFRIPRHAVQKLRQVFGENELPSKAVKQNLSEELGIDPEKVNKWFKNARYVALKARKVEGTKPLLSPSKSKEFNVEAVQKDDGDKLASNNAKKISNKKQHKRILLRPCTTNKDDDLEIGEDDESLKKLLEERMKEKKKKKGKKGRGRGGGYEEAEKEMERVCKIKRRLENMKQVLLRFTNTKKPKKSHKSTLFQHTTFYVPVAQLKEKT | 699 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3227619 | 3232816 | - | Bma000566.1 | Bma01g00392 | 74909 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00392 | 699 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Bma01g00392 | 699 | Pfam | PHD-finger | 235 | 290 | IPR019787 | - | |
Bma01g00392 | 699 | ProSitePatterns | Zinc finger PHD-type signature. | 236 | 287 | IPR019786 | - | |
Bma01g00392 | 699 | Coils | Coil | 641 | 661 | - | - | |
Bma01g00392 | 699 | CDD | PHD_PRHA_like | 236 | 287 | IPR045876 | - | |
Bma01g00392 | 699 | CDD | homeodomain | 489 | 540 | IPR001356 | GO:0003677 | |
Bma01g00392 | 699 | Gene3D | - | 489 | 550 | - | - | |
Bma01g00392 | 699 | MobiDBLite | consensus disorder prediction | 36 | 50 | - | - | |
Bma01g00392 | 699 | SMART | HOX_1 | 487 | 549 | IPR001356 | GO:0003677 | |
Bma01g00392 | 699 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 284 | IPR013083 | - | |
Bma01g00392 | 699 | PANTHER | POLYCOMB PROTEIN PCL | 3 | 673 | - | - | |
Bma01g00392 | 699 | ProSiteProfiles | Zinc finger PHD-type profile. | 233 | 290 | IPR019787 | - | |
Bma01g00392 | 699 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 3 | 673 | - | - | |
Bma01g00392 | 699 | SMART | PHD_3 | 235 | 288 | IPR001965 | - | |
Bma01g00392 | 699 | MobiDBLite | consensus disorder prediction | 99 | 135 | - | - | |
Bma01g00392 | 699 | Pfam | Homeodomain | 496 | 539 | IPR001356 | GO:0003677 | |
Bma01g00392 | 699 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Bma01g00392 | 699 | SUPERFAMILY | FYVE/PHD zinc finger | 226 | 292 | IPR011011 | - | |
Bma01g00392 | 699 | ProSiteProfiles | 'Homeobox' domain profile. | 485 | 545 | IPR001356 | GO:0003677 | |
Bma01g00392 | 699 | MobiDBLite | consensus disorder prediction | 326 | 363 | - | - | |
Bma01g00392 | 699 | SUPERFAMILY | Homeodomain-like | 486 | 544 | IPR009057 | - | |
Bma01g00392 | 699 | MobiDBLite | consensus disorder prediction | 343 | 361 | - | - | |
Bma01g00392 | 699 | MobiDBLite | consensus disorder prediction | 624 | 646 | - | - | |
Bma01g00392 | 699 | MobiDBLite | consensus disorder prediction | 440 | 459 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00392 | Bma-Chr1:3227619 | Bma05g00672 | Bma-Chr5:39309718 | 9.81E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56638 | PF00628 | PHD | 3.30E-09 | CL0390 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00392 | - | - | qlo:115986711 | 738.028 |