Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00403 ATGCCGGACGTCCAAGCTCAAGTAAACGATTTCCTTATAAAGCTTAAGAAACGTAAAATTGAGGGTTCGCAGGCCACTGCCAGGCAAACTGCTGAGTTGCTTCGATCATTTATTTCACAGCAGCGACTGCCCTATATTAATCAAGCTGGAGCTTTGATTGATGCTGTGAAGGCTGTAGGCGAGCAACTGATTGCTGCAAATCCTGTCGAGCTTGCTGTGGGCAATATTGTGAGGCGTGTTTTGCACATTATTAGAGAGGAGGATTTATCTCTAGCAACAGCTGCTATTGCTGGGTTGAGTGTGTCAGCCACTAGCGACGATGAAGATGACACCAAGAGAGATGATCACCCAACTCTCTCTGCTGCTGTTGTTGCTGCTGCTGCAAGAAGCACTTTACGTCCCCCTTCCTTGCAGACCCTTCTTGAAGATATTCCCGATGCAGCGGCTCCCCATAAAACTTCTTCATCTGGGGGTGATTCCGAAGGAAAAAGCAAATCGGCCGATAAAAGTTCTAGAAGTCGAAAATTGAAGCATGATGTAATTGAAGCTGTTAATGAACTCATTCAAGACATCACAACTTGCCATGAACAAATAGCTGAGCAAGCAGTAGAACACATCCATCAAAATGAAGTTATATTGACTCTTGGAAGTTCCAGAACAGTCCTGGAATTTCTTTGTGCTGCAAAGGAGAAAAAAAGATCTTTTCGGGTTTTTGTTGCAGAGGGTGCTCCAAGGTATCAGGGGCATCTTCTTGCAAAAGAATTATCTTCAAGAGGTTTACAAACAACAGTTATAACTGATTCTGCAGTTTTTGCTATGATCTCTAGGGTGAACATGGTTATAGTTGGAGCACATGCTGTCATGGCCAATGGTGGGGTAATAGCACCTGTTGGGTTAAATATGGTTGCACTTGCTGCTCAAAGGCATGCTGTCCCCTTTGTTGTTCTTGCTGGAAGCCACAAGTTGTGCCCATTGTATCCACACAACCCTGAAGTTCTGCTCAATGAGCTGCGGTCCCCATCAGAGTTGCTGGATTTTGGAGAAATTTCAGACTGCTTGGATTTTGGAAGTGACACTGGCTCTCCTCTTCTTCATGTGGTTAATCCAACGTTTGATTATGTGCCACCAAAACTTGTTAGTCTGTTTATTACAGACACCGGGGGGCATAATCCATCATACATGTACCGGCTGATTGGTGACTATTACTCTGCTAAAGATCTAATAGTACAACGAAGAACTTGA 1242 44.12 MPDVQAQVNDFLIKLKKRKIEGSQATARQTAELLRSFISQQRLPYINQAGALIDAVKAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLATAAIAGLSVSATSDDEDDTKRDDHPTLSAAVVAAAARSTLRPPSLQTLLEDIPDAAAPHKTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDITTCHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELSSRGLQTTVITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMVALAAQRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEISDCLDFGSDTGSPLLHVVNPTFDYVPPKLVSLFITDTGGHNPSYMYRLIGDYYSAKDLIVQRRT 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3357723 3361111 - Bma000580.1 Bma01g00403 74920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00403 413 MobiDBLite consensus disorder prediction 148 176 - -
Bma01g00403 413 Pfam Initiation factor 2 subunit family 19 391 IPR000649 GO:0044237
Bma01g00403 413 SUPERFAMILY NagB/RpiA/CoA transferase-like 7 406 IPR037171 -
Bma01g00403 413 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 54 408 - -
Bma01g00403 413 MobiDBLite consensus disorder prediction 162 176 - -
Bma01g00403 413 PANTHER BNAA01G32370D PROTEIN 54 408 - -
Bma01g00403 413 Gene3D - 194 401 IPR042529 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00403 Bma-Chr1:3357723 Bma07g00574 Bma-Chr7:8005725 1.25E-14 dispersed
Bma09g00660 Bma-Chr9:44211172 Bma01g00403 Bma-Chr1:3357723 4.85E-17 transposed
Bma09g00997 Bma-Chr9:49489944 Bma01g00403 Bma-Chr1:3357723 4.09E-23 transposed
Bma01g00403 Bma-Chr1:3357723 Bma06g01038 Bma-Chr6:47213299 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00403 K03754 - mnt:21406699 702.205