Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00407 GGGAAGACGATGGCAAGTATTGATCCAAGAAATGGGGAGGAGATAGGAAGAGTTGCAGAAGGAGACAAAGAAGATGTTGATTTAGCAGTCCAGTCTGCGAGAGAAGCTTTTGATCATGGCTCCTGGCCTCGCATGCCCCCTTTCGAAAGAGGAAGGATACTACTTAAGCTAGCAGATTTAATTGAAGAAAATGCAGAAGAAATAGCTACTTTAGACGCCATTGACGCCGGAATTTTGTACAGCATGTGTATAGGAGTGAACATTTCTCATACGGTCCAACTTCTCCGATACTACGCCGGAGCAGCCGATAAAGTTACCGGCGAAGTGTTTAAAATGTCGAGTGCATTTCACGGCTACACATTGCTCGAGCCAATCGGAGTGGTCGGCCTCATCATCCCGTGGAATTTTCCATTGGCCATGCTCTTTATCAAGCTTAGCCCTGCCCTTGCAGCCGGTTGCACCGTCATTGTCAAGCCAGCCGAGCAGACGCCTCTATCGGCTCTCTATTGTGCTCATCTTGCAAAACTGGCCGGAGTGCCAGATGGGGTAGTCAACGTTGTCAATGGGTTTGGACCAACAGCTGGAGCAGCAATTAGCTCACATATGGATATTGACGCAGTGAGTTTTACTGGGTCTACAGAGGTTGGGCGTAAGATAATGGAGGCTGCAGCAAGAAGCAATCTAAAGACAGTTTCACTTGAACTGGGAGGCAAATCACCCCTCATCATTTTTGATGATGCAGATGTAGAAAAAGCTGCTGAAACTGCACTTCTTGGTGTTGTTTTCAATAAGGGAGAGGTTTGTGTGGCTGGGTCTAGAGTGTATGTTCAAGAAGGAATCTATGATGAGGTTGTGAAGAAGCTTGTGGAGAAGGCTAAGAACTGGGTGGTTGGAGACCCATTTGACCCTACTGCTCAACAAGGACCCCAGGTGGACAAGAATCAATTTGAGAAGATTCTTTCCTACATTGATCATGGAAAAAGAGAGGGAGCCACTTTGTTGACAGGAGGAAACTCCATTGGCGTCAAGGGTTATTACATACAGCCCACCATTTTCACTGATGTGAAGGATGACATGGTTATAGCCCAGGAGGAGATATTTGGACCTGTAATGGCACTTATGAAATTCAAGGAAGTGGAAGAAGTTGTGAAAAGGGCAAACTGCACAAAATATGGGTTAGCAGCAGGGATCATGACAAACAACATTGACATAGCCAACACAGTTTCAAGATCAGTGAGGGCTGGATGTGTTTGGATCAATTGCTATCTTGTTGTGGACATTGGAATGCCTTTTGGTGGCTTTAAGATGAGTGGATTTGGCAAGGATTATGGAATGGAGGGTCTCAAAAAGTATCTCCGAGTTAAATCTGTTGTCACTCCTCTTTATAACTCTCCTTGGCTTTGA 1404 45.58 GKTMASIDPRNGEEIGRVAEGDKEDVDLAVQSAREAFDHGSWPRMPPFERGRILLKLADLIEENAEEIATLDAIDAGILYSMCIGVNISHTVQLLRYYAGAADKVTGEVFKMSSAFHGYTLLEPIGVVGLIIPWNFPLAMLFIKLSPALAAGCTVIVKPAEQTPLSALYCAHLAKLAGVPDGVVNVVNGFGPTAGAAISSHMDIDAVSFTGSTEVGRKIMEAAARSNLKTVSLELGGKSPLIIFDDADVEKAAETALLGVVFNKGEVCVAGSRVYVQEGIYDEVVKKLVEKAKNWVVGDPFDPTAQQGPQVDKNQFEKILSYIDHGKREGATLLTGGNSIGVKGYYIQPTIFTDVKDDMVIAQEEIFGPVMALMKFKEVEEVVKRANCTKYGLAAGIMTNNIDIANTVSRSVRAGCVWINCYLVVDIGMPFGGFKMSGFGKDYGMEGLKKYLRVKSVVTPLYNSPWL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3396971 3406942 + Bma000584.1 Bma01g00407 74924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00407 467 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 237 426 IPR016163 GO:0016620
Bma01g00407 467 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 455 IPR016162 GO:0016491
Bma01g00407 467 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 467 - -
Bma01g00407 467 CDD ALDH_F1-2_Ald2-like 1 458 - -
Bma01g00407 467 SUPERFAMILY ALDH-like 1 463 IPR016161 GO:0016491
Bma01g00407 467 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER C4-LIKE 1 467 - -
Bma01g00407 467 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 233 240 IPR029510 GO:0016491
Bma01g00407 467 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 261 272 IPR016160 GO:0016491
Bma01g00407 467 Pfam Aldehyde dehydrogenase family 2 457 IPR015590 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00407 Bma-Chr1:3396971 Bma07g00481 Bma-Chr7:5816668 0 dispersed
Bma09g00309 Bma-Chr9:25820435 Bma01g00407 Bma-Chr1:3396971 8.55E-14 transposed
Bma09g00986 Bma-Chr9:49380337 Bma01g00407 Bma-Chr1:3396971 5.15E-45 transposed
Bma01g00407 Bma-Chr1:3396971 Bma06g01043 Bma-Chr6:47255350 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00407 K12355 - jre:108997881 712.605