Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00411 ATGAACAGTAGATTAAGCATAACAACTGGTGCAAGCGTACTTTCACAATGCCGGTCCCACCTTTGTCCTACCTCGGGGAGAATTCGTGAAAGGAACTGCAGCTTCAATTACTGTACTTTGCTTTTCAAAAATGGATTTAGAAGACAAAATTCTTGCCAAAGTCCTTTTTCAAGTGTGCAAAGCACTCCAGAGAAAAATGGACATTTGGATGACGCATCAAGAAGTCCAGAGCTTCTTCAAGAGTTTCTGAAATCTGGTCCAAAAAAGGAATTTATTCGATCTTGTCCTGAGACAAAAAATTTGGGTTCATCAAAATCTAAAATTACAGATCTTCAGAGGACTACTAACAAGTTGACTAAGAAGCAAGATTCAAGGAAAATTTTACCTAATCCTAATTGTCAGCCTTCTTCTAGAAAGCAACAAAGAAAGGTAGAAAATCCTACTCGAGTCCATGCAGCGAATGACCAGTCTCCAGATTTTGGATATTCAAGCTCATGGGTCTGTAAAAACTCTGCTTGTAGAGCTGTTTTATCTATAGATGACACATTTTGCAAGAGGTGTTCTTGCTGCATCTGTCACTTATTTGACGACAACAAGGACCCTAGCCTTTGGCTAGAATGCTCAACTGAAGCTGATGTGGGGGATTCCTGTGGGCTATCTTGTCACATAGAGTGTGCTCTTCAGCATGAAAAGGTGGGAGTTATTGATTTTGGGCACCTGATGCAGCTTGACGGGAGTTATTGTTGTGCTTCTTGTGGTAAAGTTTCTGGGATACTTGGATGTTGGAAGAAGCAGCTAATTATAGCTAGAGATGCTCGTCGGGTTGATATACTCTGTTATCGGATATATTTGAGTCACAAACTTCTTGATGGGACTTCAAGGTTTAAAGAACTTCATGAAGTTATAAAAGACGCCAAGGCTAAACTCGAAACTGAAGTTGGTCCAGTAAATGGAACTTCTGTCAAAATGACTCGAGGTATTGTCAGCAGACTTCCTGTAGCAGGGGAAGTGCAGAAACTCTGCACTCTTGCAATTGAAAAGGCAGATGAGTGGCTGGCTTCTGTCTCAAATGTGAATCCAAGCAGCAGAGAAGATTCGCTTCCAGCAGCTTGCAAGTTTCTGTTCGAAGAGATAACGTCATCGTCTGTTGTAATTATTTTAGTCGAACTTCCTAATGCACTCACCAATGAAATTAAAGGGTACAAGCTTTGGTACAACAAGAGTAGAGAAGAGGCTCACACAAAAGATCCTGAGCCTGTTAGTGTATTTCCAAGAGCGCAAAGAAGAATTTTAATATCGAACCTATCGCCCTGCACAGAATATGCCTTTAGGATCATGTCATATACAGATAAAGGGGACTTGGGTCACTCAGAGGCCAAGTGTTTTACTCGAAGTGTGGAAATAATTCACAAAACTTCCAAGTCTCCAGTTTCTCAGATTTGTAAGAAAATGAGTCCTATTGAAGGAATTTCTTGTAGTAAGAGGGGGCCAAATAATACTACCGTAGTTACTTCGTCTGTTGGGTTCAAAGTTCGAGATCTTGGAAAGATCCTGCGCAATGCATGGGCTAAAGAGGAAGGCTGCATGGATGGATTTTGCAGTGTAGAAACAGACAAATGCTGTGAAAATAGAGTTTCCAAGGTGGTTAAGTCCCGTGGGGAAGAACAAAAGTTACCCACTGTATGTCAAGGACTTGATTTGAATGTCGTCTCAGTACCTGATTTAAATGAAGAGCTAACACCTCCATTTGAGTCATCCAGAGATGAAGATAATGGATGTACTTTACCCCAGACTGTTGAGGCCGATGATGATGCTGCTTCTCCTGACATTGAGAAGCCTTGTTTAGGAAGATCTAACGGCAGTGACGACTCCCAAACCTGGACCATTGGTCGAGCCAGAGAAGTTCCAGCAGTTGATTCTCATGTTAAACTGAGCAGGAAAAGATTAGCCAGCACAAATGAAGAGATACATGATTGTGACAGTACTCTAATTAATGGCTCTCCTAGCCGAAAATCAAATGGTTTGCGTTGCCTTGACGAGAATTTTGAATACTGTGTGAAGATAATCAGATGGCTGGAATGTGAGGGTCACATTAAACAGGAATTCAGGTTGAAACTGCTAACCTGGTTTAGCTTGAGATCGACGGAGCAGGAACGTAGGGTAGTTAACACGTTTATCCAAACTCTCATTGATGATCCTTTTAGCTTAGCTGGACAATTGGTTGATTCCTTTTCAGACATCATTTCCTGCAAGAAACCTAGGAATGGATTCTGCAATAAGGCATGA 2286 41.43 MNSRLSITTGASVLSQCRSHLCPTSGRIRERNCSFNYCTLLFKNGFRRQNSCQSPFSSVQSTPEKNGHLDDASRSPELLQEFLKSGPKKEFIRSCPETKNLGSSKSKITDLQRTTNKLTKKQDSRKILPNPNCQPSSRKQQRKVENPTRVHAANDQSPDFGYSSSWVCKNSACRAVLSIDDTFCKRCSCCICHLFDDNKDPSLWLECSTEADVGDSCGLSCHIECALQHEKVGVIDFGHLMQLDGSYCCASCGKVSGILGCWKKQLIIARDARRVDILCYRIYLSHKLLDGTSRFKELHEVIKDAKAKLETEVGPVNGTSVKMTRGIVSRLPVAGEVQKLCTLAIEKADEWLASVSNVNPSSREDSLPAACKFLFEEITSSSVVIILVELPNALTNEIKGYKLWYNKSREEAHTKDPEPVSVFPRAQRRILISNLSPCTEYAFRIMSYTDKGDLGHSEAKCFTRSVEIIHKTSKSPVSQICKKMSPIEGISCSKRGPNNTTVVTSSVGFKVRDLGKILRNAWAKEEGCMDGFCSVETDKCCENRVSKVVKSRGEEQKLPTVCQGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLPQTVEADDDAASPDIEKPCLGRSNGSDDSQTWTIGRAREVPAVDSHVKLSRKRLASTNEEIHDCDSTLINGSPSRKSNGLRCLDENFEYCVKIIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPFSLAGQLVDSFSDIISCKKPRNGFCNKA 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3442039 3446146 + Bma000588.3 Bma01g00411 74928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00411 761 PANTHER VIN3-LIKE PROTEIN 2-RELATED 97 760 IPR044514 GO:0010048|GO:0040029
Bma01g00411 761 MobiDBLite consensus disorder prediction 97 156 - -
Bma01g00411 761 PANTHER VIN3-LIKE PROTEIN 1 97 760 - -
Bma01g00411 761 Gene3D Immunoglobulins 370 463 IPR013783 -
Bma01g00411 761 CDD FN3 375 453 IPR003961 GO:0005515
Bma01g00411 761 Pfam PHD - plant homeodomain finger protein 168 286 IPR032881 -
Bma01g00411 761 SUPERFAMILY Fibronectin type III 377 460 IPR036116 GO:0005515
Bma01g00411 761 MobiDBLite consensus disorder prediction 53 74 - -
Bma01g00411 761 MobiDBLite consensus disorder prediction 580 627 - -
Bma01g00411 761 CDD PHD_VIN3_plant 188 252 - -
Bma01g00411 761 MobiDBLite consensus disorder prediction 125 141 - -
Bma01g00411 761 MobiDBLite consensus disorder prediction 97 113 - -
Bma01g00411 761 ProSiteProfiles Fibronectin type-III domain profile. 367 468 IPR003961 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00411 Bma07g00477 CCT
Bma01g00411 Bma07g00477 ECH
Bma01g00411 Bma06g01054 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00411 Bma-Chr1:3442039 Bma07g00477 Bma-Chr7:5781557 0 dispersed
Bma01g00377 Bma-Chr1:3102288 Bma01g00411 Bma-Chr1:3442039 3.06E-24 transposed
Bma01g01376 Bma-Chr1:21384879 Bma01g00411 Bma-Chr1:3442039 4.78E-20 transposed
Bma01g00411 Bma-Chr1:3442039 Bma06g01054 Bma-Chr6:47356756 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00411 - - qsu:111988827 1065.06