Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00424 | ATGGCTACCATATCGAGGGAAGATCACTCCGACGACTATGATAGTAGCTGCTCCTCCATCACCGTCCCGGACTCTAGCCGGAGCTGGATGAGCAACCTTAGCTTCGGCAGCCGACGGCTCAGCTCGGCCTCCTGCGAAGTTTCTCCTCACAAGCCACACAAGGCTAACCATGCCGCCTGGGAATCCATGAGATGGCTGAGGGGGGCTGCGGGATGCGTCGGGCTAGACCATTTTCGGCTGCTTCGCCGGCTCGGAAGTGGCGATATAGGAAATGTGTATCTTTGTCAGATAAGAAATCCATTGGTGGGTTTGCCTCAGAGCTTTTATGCCATGAAAGTGGTGGATAGAGAAGCTCTGGCTATAAGGAAGAAATTGAAAAGAGCAGAAATGGAGAAGGAGATTCTTGGTTTGCTTGATCATCCTTTTCTGCCTACTCTTTACGCCGCCTTTGAGGCTTCTCACTACTCTTGTTTGGTTATGGAGTTTTGTATTAATTGGAAAATTTGCAGGTTTTACGCAGCAGAAGTGATCTTAGCAATAGAATATCTGCACATGATGGGAATTGTTTACAGAGATTTAAAGCCTGAAAATGTACTAATCAGAGAAGACGGCCACATAATGTTGTCCGATTTCGATCTCTGTCTCAAATGCGATGTCGTTCCCAGGCTCGTCCGGCCAAGAAGAACAGCCAGTGAAGTCCGGTCCGCCGGTAAAGGTTCCGACAGAAGTTCTTCTTCTTCTTGCGTCGGTCCGTTAAAGCCAGTCTTGTCTTGCTTCTCAAAACGAACCAAACCAACAAAAACAACAACCATCATAGAGCAGGCTGATCATTTTCTTCTAGAGCCCGAACCAGAGTTAGTAGCAGAGCCAAGTGGGGCCCGCTCGAAATCTTTCGTCGGCACCCACGAATACCTAGCCCCGGAGATCATATCCGGCGAGGGCCACGGAAGTGCGGTCGATTGGTGGACATTAGGAGTGTTTTTATACGAAATGCTGTACGGAAAAACTCCGTTTAAAGGCGAAAACAACGAGAAAACCCTAGTAAACATTCTGAAGCAGCCATTGACGTTTCCAAGAATAGGAGTAAGTAGCAGCAAAGAGTACGAAGAAATGGTGAAAGTTCAAGATTTGATAATGAAACTGCTGGCGAAGAATCAGAAGAAGAGAATCGGAAGCGTAAAGGGTTCGACAGAAATCAAGAGGCATGAATTTTTCAAAGGAGTCAACTGGGCTTTGATTCGTTCCGTAAAACCACCTGAAATTCCTCGAGATTTGCAGAATATCAGACGGAGAAGCTACGTTCCAAAGCTGAGCAAGAAGGAGAGAGACGAACCTTACCAAATTCCTCACCACCATGTTGATTACTTCTAA | 1371 | 46.97 | MATISREDHSDDYDSSCSSITVPDSSRSWMSNLSFGSRRLSSASCEVSPHKPHKANHAAWESMRWLRGAAGCVGLDHFRLLRRLGSGDIGNVYLCQIRNPLVGLPQSFYAMKVVDREALAIRKKLKRAEMEKEILGLLDHPFLPTLYAAFEASHYSCLVMEFCINWKICRFYAAEVILAIEYLHMMGIVYRDLKPENVLIREDGHIMLSDFDLCLKCDVVPRLVRPRRTASEVRSAGKGSDRSSSSSCVGPLKPVLSCFSKRTKPTKTTTIIEQADHFLLEPEPELVAEPSGARSKSFVGTHEYLAPEIISGEGHGSAVDWWTLGVFLYEMLYGKTPFKGENNEKTLVNILKQPLTFPRIGVSSSKEYEEMVKVQDLIMKLLAKNQKKRIGSVKGSTEIKRHEFFKGVNWALIRSVKPPEIPRDLQNIRRRSYVPKLSKKERDEPYQIPHHHVDYF | 456 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3538782 | 3540396 | + | Bma000601.1 | Bma01g00424 | 74941 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00424 | 456 | SUPERFAMILY | Protein kinase-like (PK-like) | 58 | 427 | IPR011009 | - | |
Bma01g00424 | 456 | Coils | Coil | 111 | 131 | - | - | |
Bma01g00424 | 456 | MobiDBLite | consensus disorder prediction | 231 | 250 | - | - | |
Bma01g00424 | 456 | ProSiteProfiles | Protein kinase domain profile. | 78 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00424 | 456 | Pfam | Protein kinase domain | 79 | 216 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00424 | 456 | Pfam | Protein kinase domain | 294 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00424 | 456 | Gene3D | Transferase(Phosphotransferase) domain 1 | 294 | 423 | - | - | |
Bma01g00424 | 456 | PANTHER | FLIPPASE KINASE 1-RELATED | 1 | 456 | - | - | |
Bma01g00424 | 456 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 188 | 200 | IPR008271 | GO:0004672|GO:0006468 | |
Bma01g00424 | 456 | Gene3D | Phosphorylase Kinase; domain 1 | 70 | 167 | - | - | |
Bma01g00424 | 456 | Gene3D | Transferase(Phosphotransferase) domain 1 | 168 | 270 | - | - | |
Bma01g00424 | 456 | PANTHER | PROTEIN KINASE PINOID 2 | 1 | 456 | - | - | |
Bma01g00424 | 456 | MobiDBLite | consensus disorder prediction | 236 | 250 | - | - | |
Bma01g00424 | 456 | SMART | serkin_6 | 78 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00424 | Bma-Chr1:3538782 | Bma13g00510 | Bma-Chr13:9806958 | 2.12E-134 | dispersed | |
Bma01g00424 | Bma-Chr1:3538782 | Bma14g00904 | Bma-Chr14:10219310 | 3.06E-136 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66254 | PF00069 | Pkinase | 1.60E-24 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00424 | K08286 | - | qsu:112027986 | 672.544 |