Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00437 | ATGAAAATGGTGCAATCAAAGAAGTTCAGAGGAGTCAGGCAGAGACACTGGGGATCATGGGTATCAGAAATTCGCCATCCCTTGCTGAAAAGAAGGGTCTGGCTAGGAACTTTCGAGACTGCAGAAGAAGCAGCCAGAACTTACGATCAAGCAGCAATTTTGATGAGTGGAAGAAACGCGAAAACGAATTTTCCAGTCTCTCAAGCTCCGACCAGCGACTCAGAAAGAAACAAGCTTTCTCCGTTATCGCCCAAGAGTTTGTCAGAAATTCTCCATGCAAAGCTGAGAAAATTCAGCAAAACACCTTCTCCTTCAATGACTTGTCTGAGGTTAGACAACGAAAATTCTCATATCGGAGTTTGGCAAAAGCGAGCTGGACAGAGTTCGATCTCAAACTCCAATTGGGTTATGACAGTCGAGTTCGGAAAGAAGAACCCTGAAAAGAATTCTTCGTCTTCTACATTGTCTTCTGACCAGCTTCCGCCATTGGAGGCTATCCCCGAGCTTCCGCTAGAGATGAGTGAGGAAGAAAAAGTTGCTTTGCAAATGATCGAGGAATTGCTCATTGGAAACAATCCAAGCCCTTCAATTCAGTGTCATGAACAAGACGCAGGTCCTTATTTCTACATTTGA | 633 | 44.39 | MKMVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARTYDQAAILMSGRNAKTNFPVSQAPTSDSERNKLSPLSPKSLSEILHAKLRKFSKTPSPSMTCLRLDNENSHIGVWQKRAGQSSISNSNWVMTVEFGKKNPEKNSSSSTLSSDQLPPLEAIPELPLEMSEEEKVALQMIEELLIGNNPSPSIQCHEQDAGPYFYI | 210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3640282 | 3641010 | - | Bma000615.1 | Bma01g00437 | 74954 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00437 | 210 | Gene3D | AP2/ERF domain | 7 | 67 | IPR036955 | GO:0003700|GO:0006355 | |
Bma01g00437 | 210 | PRINTS | Ethylene responsive element binding protein signature | 9 | 20 | IPR001471 | GO:0003700|GO:0006355 | |
Bma01g00437 | 210 | PRINTS | Ethylene responsive element binding protein signature | 31 | 47 | IPR001471 | GO:0003700|GO:0006355 | |
Bma01g00437 | 210 | MobiDBLite | consensus disorder prediction | 143 | 162 | - | - | |
Bma01g00437 | 210 | SMART | rav1_2 | 8 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
Bma01g00437 | 210 | MobiDBLite | consensus disorder prediction | 63 | 82 | - | - | |
Bma01g00437 | 210 | MobiDBLite | consensus disorder prediction | 143 | 160 | - | - | |
Bma01g00437 | 210 | ProSiteProfiles | AP2/ERF domain profile. | 8 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Bma01g00437 | 210 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 3 | 199 | - | - | |
Bma01g00437 | 210 | SUPERFAMILY | DNA-binding domain | 8 | 67 | IPR016177 | GO:0003677 | |
Bma01g00437 | 210 | PANTHER | AP2-EREBP TRANSCRIPTION FACTOR | 3 | 199 | - | - | |
Bma01g00437 | 210 | CDD | AP2 | 7 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Bma01g00437 | 210 | Pfam | AP2 domain | 8 | 56 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g00437 | Bma11g00863 | CCT | |
Bma01g00437 | Bma11g00863 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00437 | Bma-Chr1:3640282 | Bma11g00863 | Bma-Chr11:31135087 | 7.34E-86 | dispersed | |
Bma01g00360 | Bma-Chr1:2966317 | Bma01g00437 | Bma-Chr1:3640282 | 7.10E-154 | wgd | |
Bma01g00437 | Bma-Chr1:3640282 | Bma06g01078 | Bma-Chr6:47608439 | 9.90E-121 | wgd | |
Bma01g00437 | Bma-Chr1:3640282 | Bma06g01066 | Bma-Chr6:47475190 | 1.53E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56645 | PF00847 | AP2 | 6.50E-12 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00437 | - | - | qsu:112002896 | 277.33 |