Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00437 ATGAAAATGGTGCAATCAAAGAAGTTCAGAGGAGTCAGGCAGAGACACTGGGGATCATGGGTATCAGAAATTCGCCATCCCTTGCTGAAAAGAAGGGTCTGGCTAGGAACTTTCGAGACTGCAGAAGAAGCAGCCAGAACTTACGATCAAGCAGCAATTTTGATGAGTGGAAGAAACGCGAAAACGAATTTTCCAGTCTCTCAAGCTCCGACCAGCGACTCAGAAAGAAACAAGCTTTCTCCGTTATCGCCCAAGAGTTTGTCAGAAATTCTCCATGCAAAGCTGAGAAAATTCAGCAAAACACCTTCTCCTTCAATGACTTGTCTGAGGTTAGACAACGAAAATTCTCATATCGGAGTTTGGCAAAAGCGAGCTGGACAGAGTTCGATCTCAAACTCCAATTGGGTTATGACAGTCGAGTTCGGAAAGAAGAACCCTGAAAAGAATTCTTCGTCTTCTACATTGTCTTCTGACCAGCTTCCGCCATTGGAGGCTATCCCCGAGCTTCCGCTAGAGATGAGTGAGGAAGAAAAAGTTGCTTTGCAAATGATCGAGGAATTGCTCATTGGAAACAATCCAAGCCCTTCAATTCAGTGTCATGAACAAGACGCAGGTCCTTATTTCTACATTTGA 633 44.39 MKMVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARTYDQAAILMSGRNAKTNFPVSQAPTSDSERNKLSPLSPKSLSEILHAKLRKFSKTPSPSMTCLRLDNENSHIGVWQKRAGQSSISNSNWVMTVEFGKKNPEKNSSSSTLSSDQLPPLEAIPELPLEMSEEEKVALQMIEELLIGNNPSPSIQCHEQDAGPYFYI 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3640282 3641010 - Bma000615.1 Bma01g00437 74954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00437 210 Gene3D AP2/ERF domain 7 67 IPR036955 GO:0003700|GO:0006355
Bma01g00437 210 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Bma01g00437 210 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Bma01g00437 210 MobiDBLite consensus disorder prediction 143 162 - -
Bma01g00437 210 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Bma01g00437 210 MobiDBLite consensus disorder prediction 63 82 - -
Bma01g00437 210 MobiDBLite consensus disorder prediction 143 160 - -
Bma01g00437 210 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Bma01g00437 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 199 - -
Bma01g00437 210 SUPERFAMILY DNA-binding domain 8 67 IPR016177 GO:0003677
Bma01g00437 210 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 3 199 - -
Bma01g00437 210 CDD AP2 7 67 IPR001471 GO:0003700|GO:0006355
Bma01g00437 210 Pfam AP2 domain 8 56 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00437 Bma11g00863 CCT
Bma01g00437 Bma11g00863 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00437 Bma-Chr1:3640282 Bma11g00863 Bma-Chr11:31135087 7.34E-86 dispersed
Bma01g00360 Bma-Chr1:2966317 Bma01g00437 Bma-Chr1:3640282 7.10E-154 wgd
Bma01g00437 Bma-Chr1:3640282 Bma06g01078 Bma-Chr6:47608439 9.90E-121 wgd
Bma01g00437 Bma-Chr1:3640282 Bma06g01066 Bma-Chr6:47475190 1.53E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56645 PF00847 AP2 6.50E-12 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00437 - - qsu:112002896 277.33