Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00446 ATGGCTTCCTCATCGGTTTCCAGCACTACAAACATCATGCTCGCTATCTTCGAGAAGAAGACGACTCAAATCGACCTTTATCGTCCACTCCGCAACTTCATCGCCTATCACTACTCTGAACGCGAAGCTCAAAGCCTCGAAGACGACCTCCAAACCCTCAAACAGTATCGTTCAGACATCGAGCGCCAATCCGACCCCTCCCCGACCTCCCGCCGCGATCTCCTTCAGAATTACTTCAAAGCCCTTTGTCTTGTTGAATCCCGTTTCCCAATCTCGCCTGACAAGGACCACATTAATACTCTCACATTCGTCTGGTTCGATGCGTTTAAGCCGAAGCAGAAGGCTTCGCAGCAGAATATTCATCTGGAGAAGGCCGCGGTTTTGTTCAATTTGGGTGCCGTTTACAGCCAGATTGCTCTTTCGTATGATCGCTCTACTGTTGAAGGGAGACGACAAGCCTCACACGCTTTTATAGCTGCGGCTGGGGCGTTTGCTTTCTTGAGAGACAATGCCGCAACTAAGGCCTCAATTGGAACCTCGACAACTGTGGATGTATCAGTTGAGTGCACTGGAATGTTGGAGCGGTTGATACTGGCTCAGGCGCAGGAGTGTGTATTTGAGAATACCATTGCCAAAGGGAGTACGCCAGGTGTTTGTGCAAAAATCTCTAGGCAGGTTGGGTTGTACTATGAGGAAGCTTTGGCAGCACTTAATGCTCCACCTCTCAACCAGCATTTTGAGAAGTCTTGGATTTCTCATGTGCAAGTAAAAGCATCTCTTTTTTATGCTGAAGCTTGTTATCGGTGTGGTATGGAGCTCCATGAGAAAGAAGAAATTGCTGAAGAAATTGCCAGGTTGAGAAGTGGGATTAATGCTCTAAATGAGAGCAAAAAGTCCGCAAAAGTTGCTGCAGCACAACTCCTGGAGGCTGTTAGCAAGTTAGAGGCCAATCTAAATCATAACTTGGAGAGGGCAGTAAAAGAGAATGATAGAGTTTACCTCATGAGGGTTCCTAATCCAAGTTCTTTGCCGCCTCTCCCAGCCTTTTCAATGGTAAAGTCAATGGCGATGAATGAAGTGTTGGATGCAAGCAAGGAAAAAATGTTTGCGAGTCTTGTGCCAGATAGCAGTGCTAAAGCTCTTTCCAGGTACACTGAAATGGTCGATGATATAATCAGGACACAAGCTGAAAAACTTCAACAAGCTAGTGAACTAACTCGAGTAAAGCTCAAGGAAATGGATCTACCAGATTCTATATTGGCTTTGGATGGAAATTTTGCTTTGCCTGTTGAGCTTAAAGAAGACGTGGAAGCAGTACAGATTAGTGGGGGACCAGCAGGCCTGGAAGCTGAGTTACAACAGCTCAGGGATTTAAGGAGGGTAAATAACGAACTGCTTGTCCAGACTGAGGAACTCTTACAGAAGGAGGCAAGAGAAGATGCTCAGTTTAGAGGCCAATTTGGGACACGATGGACTAGGCCTCACTCTAACACTTTGACAAAGAACTTGCAGGATAGGTTGAACAAATTTGCAAGCAACTTGAAGCAAGCTGCAGATAGTGATGGTAGAATAGAGCGTTCTGTCAGAGAACATGCATCTTTCATGTCAATTCTTGATAAACGACCAATTGAATCTGCCCTCCCAAGTTTGGCCAGACCCATTATGTCTTTAGATGCCAATGAAGATGCCGTTGTGGGAGATCTGAAGCAGAGCTTGAGGCAATTGGAAACTCTTGGCGCTCAACGAGCTGGTCTAGAAGACATGCTTAAAGAGATGAAAAGGAAGGATAATATTCTACCAAAGTTGATGACATCAACTGGTTCCTATGAAGATCTTTTCAAGAAGGAGATTTCCAAATATGAGCTTATTTGTGGGGACATTGCTCAAAACATCGAAGCTCAAGAACAGTTGTTGCTGCAAATTCAGGCACAGAACGATGATTTTGCTGCCTTATTTAATCTTGAAGATTATAAAGTATCTCGCCAAAGATGTTATAAGCAGATTGAAGCTGCAATAGCCAAGTATCGAGAAATCAAGGACAACATCAACGAAGGATTAAAATTCTATGTTACTCTTCAAGAAGCAATCACAAATATAAAGCAGCAGTGCAGTGATTATGTGATGACAAGAAACATCCAGTGCCGAGAAATGATCGAAGATGTCCAAAGACAATTGGCCGGTTTCAGCTTCCAGGATGGAAAAGGTGCAGGAGCATATAATTACCCTCAGGCAGGGAATCAACCTCAAAGATCCAACTCTCTGCCGCAATCTGAACCTCGCCCTCCGGCATCCTATTACCAACCTTCTGATCAGCCAATGGGCCCCGGCTATGCGTCCCCTATGTATAACTCTGCAAATCAGCCACCCTCTCCATACCATGTGCCACATCCATCCGGCCCATATCCACCTCCACAAACTAATCAGGCAGCTCCGGCAAGTCACGAGTATGGCCAGCCAGCCTACCCTGGGTGGAGAGGCCCGTATTACAATGCCCTTGCACAGCAACCAGGCTCTGCTCCTCGCCCTCCCTACACCATTCCAGCACCGTACCCACCTCATCAAAGTGGTCAGTATAGGCCACAATAA 2586 45.94 MASSSVSSTTNIMLAIFEKKTTQIDLYRPLRNFIAYHYSEREAQSLEDDLQTLKQYRSDIERQSDPSPTSRRDLLQNYFKALCLVESRFPISPDKDHINTLTFVWFDAFKPKQKASQQNIHLEKAAVLFNLGAVYSQIALSYDRSTVEGRRQASHAFIAAAGAFAFLRDNAATKASIGTSTTVDVSVECTGMLERLILAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNAPPLNQHFEKSWISHVQVKASLFYAEACYRCGMELHEKEEIAEEIARLRSGINALNESKKSAKVAAAQLLEAVSKLEANLNHNLERAVKENDRVYLMRVPNPSSLPPLPAFSMVKSMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDIIRTQAEKLQQASELTRVKLKEMDLPDSILALDGNFALPVELKEDVEAVQISGGPAGLEAELQQLRDLRRVNNELLVQTEELLQKEAREDAQFRGQFGTRWTRPHSNTLTKNLQDRLNKFASNLKQAADSDGRIERSVREHASFMSILDKRPIESALPSLARPIMSLDANEDAVVGDLKQSLRQLETLGAQRAGLEDMLKEMKRKDNILPKLMTSTGSYEDLFKKEISKYELICGDIAQNIEAQEQLLLQIQAQNDDFAALFNLEDYKVSRQRCYKQIEAAIAKYREIKDNINEGLKFYVTLQEAITNIKQQCSDYVMTRNIQCREMIEDVQRQLAGFSFQDGKGAGAYNYPQAGNQPQRSNSLPQSEPRPPASYYQPSDQPMGPGYASPMYNSANQPPSPYHVPHPSGPYPPPQTNQAAPASHEYGQPAYPGWRGPYYNALAQQPGSAPRPPYTIPAPYPPHQSGQYRPQ 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3702185 3709112 - Bma000623.2 Bma01g00446 74963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00446 861 MobiDBLite consensus disorder prediction 790 807 - -
Bma01g00446 861 Pfam ALIX V-shaped domain binding to HIV 428 712 IPR025304 GO:0005515
Bma01g00446 861 MobiDBLite consensus disorder prediction 840 861 - -
Bma01g00446 861 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 5 851 - -
Bma01g00446 861 SMART BRO1_2 12 396 IPR004328 -
Bma01g00446 861 MobiDBLite consensus disorder prediction 742 760 - -
Bma01g00446 861 ProSiteProfiles BRO1 domain profile. 11 406 IPR004328 -
Bma01g00446 861 CDD V_Alix_like_1 374 710 - -
Bma01g00446 861 Coils Coil 276 328 - -
Bma01g00446 861 Coils Coil 43 63 - -
Bma01g00446 861 Pfam BRO1-like domain 13 391 IPR004328 -
Bma01g00446 861 Gene3D alix/aip1 like domains 420 701 - -
Bma01g00446 861 Gene3D alix/aip1 like domains 8 373 IPR038499 -
Bma01g00446 861 Coils Coil 575 595 - -
Bma01g00446 861 Coils Coil 448 478 - -
Bma01g00446 861 CDD BRO1_Alix_like_1 13 368 - -
Bma01g00446 861 Gene3D alix/aip1 in complex with the ypdl late domain 374 652 - -
Bma01g00446 861 PANTHER PCD6 INTERACTING PROTEIN-RELATED 5 851 IPR045251 GO:0071985
Bma01g00446 861 MobiDBLite consensus disorder prediction 737 861 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00446 K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein - jre:109007972 1339.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00446 Bma06g01101 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00446 Bma-Chr1:3702185 Bma06g01101 Bma-Chr6:47802586 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g393 Blo01g00742 Blo16g00725 . Bda11g00157 Bpe13g01041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0415 Cone9ag0438 . Csa05g02045 . . . . . Bda11g00157 . . Bma01g00446 Bma06g01101 . . Cmo15g00979 . Cma15g00940 . Car15g00882 Cpe13g00383 . Bhi12g00868 . . . . . Lcy10g1452 Cla01g00590 Cam01g0617 Cec01g0607 Cco01g0633 Clacu01g0609 Cmu01g0582 Cre09g1923 Lsi09g00639 . Chy09g00875 Cme09g01408
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007554 2 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36