Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00453 ATGGGGCTTCAGAGCCAGCTCAACGACTTGTCCTCCGTTTCCATTCCTCTTCTTCTGGTCGCCACTCTCGCTACCTGCCTCAACTACCTCCGATCTTCCTTCTCCGATCTTATACACTCCGTCCGCCCCTCCCGATTTCACCCCCACCACCACCTTGACGATGGACTCTTCGATGCCGTCGGATCGGGACTCGCCGGACTTATTCTGTTCGCTGAGCAAATGAACCTGAATCGCGATTTGTCCCACCGGTTCGGCGACGAAATCGACGACGCCCTTGGTGAGGTCTCCGACTGCGTGGTTTGCTTGTCTAATTTGAAGGTCGGGGATAGAGTACGGCGGCTTTCCTGCCGCCATGTGTTCCACAAGGAGTGCTTCGACGGCTGGCTCGATCATCTCAACTTTAACTGCCCTCTCTGTCGGTCTCCTCTCGTTTCTGATGAGCGAGCGTCCGTCACGCGCCGTCATGTTGGTGAAGATGTCGTTTCCTGGCTATCGATGCGGTGA 504 56.15 MGLQSQLNDLSSVSIPLLLVATLATCLNYLRSSFSDLIHSVRPSRFHPHHHLDDGLFDAVGSGLAGLILFAEQMNLNRDLSHRFGDEIDDALGEVSDCVVCLSNLKVGDRVRRLSCRHVFHKECFDGWLDHLNFNCPLCRSPLVSDERASVTRRHVGEDVVSWLSMR 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3762198 3762701 + Bma000629.2 Bma01g00453 74970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00453 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 157 IPR013083 -
Bma01g00453 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 165 - -
Bma01g00453 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 165 - -
Bma01g00453 167 SMART ring_2 98 139 IPR001841 -
Bma01g00453 167 SUPERFAMILY RING/U-box 97 146 - -
Bma01g00453 167 Pfam Ring finger domain 97 140 IPR001841 -
Bma01g00453 167 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00453 Bma-Chr1:3762198 Bma05g01183 Bma-Chr5:50957905 1.64E-14 dispersed
Bma01g00453 Bma-Chr1:3762198 Bma06g01093 Bma-Chr6:47744846 9.18E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00453 K16282 - zju:107413314 224.557