Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00461 ATGAAGAGGGAACACTTCCAGTTAAATCCTCAACCTGGCCCATCTTCGATGACCGGAAAATCCAAGCTTTGGGAAGATGGGTCACAACGAGACGGCGGTGTGGATGAGCTTCTGGCTGTTTTGGGGTACGAAGTTAGGTCGTCGGACATGGTCGACGTTGCCCAGAAGCTTGAAAAGCTTGAAGAGTTTATGGGTAATGTTCAAGAAGATGGACTCTCTTATCTTGCATCCGAAACTGTCCATTATAATCCTTCCGATCTATCCACCTGGCTCGAAAGCATGATTTACGAGCTTAACCCATCTCCAACCTTCGATTCCATCGTCGGGCCACCGGCTAAGACACCGCTGGACGGTTCGTTTCTACCTCCTGCTGGTTCCTGCACCGTAACCTCCATTGATTTCGCAGAACAAAGAAACCAGAGGTTGTTCGAAGGGTCTTCTAATTCAGATTATGATCTGAAAGCTATACCTGGTAAGGCTATTTGTAACCGAAATACCCAATTTCAAGAAACGTGGTCTAGAGAGAAGAAACGACTAAAACCCTCATCTGAGCTGGAATCGGAATCGGAATCGGAACAATTTTCAGAGTCATTAACTGGGCCTGTAGTCCTAGTTGACTCGCAGGAAAACGGAATTCAACTTGTTCACACTCTAATGGCCTGCGCCGAAGCCGTTCACCAAAACAGCCTAAATCTAGCCGAGGCTCTCCTCAAACGGGTCGGCTATCTCGCAGTCTCTCAAACCGGAGCTATGCGGAAAGTCGCCACCTATTTTGCCGAAGCTCTAGCTCGCAGGATTTACAGGCTCTACCCTCGGAACGCTCTTGGCCATTCTTTCTCCGATTCGCTTCAATCTCATTTCTACGAGAGTTGTCCTTACCTTAAATTTGCTCATTTCACTGCAAATCAAGCGATTCTCGAAGCTTTTGAAGGTAAAAAACGAGTTCACGTCGTTGATTTTTCTATGAATCAAGGTATGCAGTGGCCGGCGCTTCTTCAAGTTCTGGCTCTGCGACCGGGTGGTCCACCGGCTTTCCGGCTAACCGGAATCGGGCCTCCGGCACGGGATAACTCCGATTATCTCCGAGAAGTCGGCTGGAAGCTTGCCCAATTAGCTGAAATGATTCATGTTAAGTTTGAATACCGTGGGTTTGTCGCCAATACCATGGCGGATCTTGATTTGTCGATGCTCGAACTCAGGCCGAGTGAGGACGAATCAGTGGCGGTCAACTCGGTTTTTGAGTTTCATAAGCTCTTTGCTCGACCGGGAGCGATCGGAAAGGTGTTGTCAGTTGTGAAGCAGATGAAGCCTTCCATCGTGACGGTGGTGGAGCAAGAAGCTAGCCATAACGGACCGAGTTTTCTCAACCGGTTCACTGAGTCTCTCCATTACTATTCCACTCTGTTTGACTCGTTGGAAGGTTCACTCACTGCCAACAATCAGGACAAGGCCATGACAGAGATGTACTTGGGTAAGCAAATCTGCAACGTGGTGGCATGTGAAGGCGCAGACAGGGTAGAGCGGCACGAGAATCTGACTCAATGGCGGACTCGGTTCCACTCAGCTGGGTTTGACTCGGCTCCCTTAGGGTCTAACGCGTACAAACAGGCCAGCATTTTGCTTGCTCTGTTTGGAAGTGGAGATGGGTATGGCGTAGAGGAGAGAAATGGGTGTCTGATGCTGGGCTGGCACAGTAGACCCCTCATCACCACCTCAGCATGGAGGGTGGCAGAGAGAGGAAAGTTGACTCAGTGA 1755 49.57 MKREHFQLNPQPGPSSMTGKSKLWEDGSQRDGGVDELLAVLGYEVRSSDMVDVAQKLEKLEEFMGNVQEDGLSYLASETVHYNPSDLSTWLESMIYELNPSPTFDSIVGPPAKTPLDGSFLPPAGSCTVTSIDFAEQRNQRLFEGSSNSDYDLKAIPGKAICNRNTQFQETWSREKKRLKPSSELESESESEQFSESLTGPVVLVDSQENGIQLVHTLMACAEAVHQNSLNLAEALLKRVGYLAVSQTGAMRKVATYFAEALARRIYRLYPRNALGHSFSDSLQSHFYESCPYLKFAHFTANQAILEAFEGKKRVHVVDFSMNQGMQWPALLQVLALRPGGPPAFRLTGIGPPARDNSDYLREVGWKLAQLAEMIHVKFEYRGFVANTMADLDLSMLELRPSEDESVAVNSVFEFHKLFARPGAIGKVLSVVKQMKPSIVTVVEQEASHNGPSFLNRFTESLHYYSTLFDSLEGSLTANNQDKAMTEMYLGKQICNVVACEGADRVERHENLTQWRTRFHSAGFDSAPLGSNAYKQASILLALFGSGDGYGVEERNGCLMLGWHSRPLITTSAWRVAERGKLTQ 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3829901 3831655 + Bma000637.1 Bma01g00461 74978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00461 584 PANTHER DELLA PROTEIN GAI1-RELATED 14 576 IPR030006 GO:0003712|GO:0005634
Bma01g00461 584 MobiDBLite consensus disorder prediction 172 194 - -
Bma01g00461 584 Pfam GRAS domain family 214 575 IPR005202 -
Bma01g00461 584 MobiDBLite consensus disorder prediction 9 23 - -
Bma01g00461 584 Gene3D - 33 98 IPR038088 -
Bma01g00461 584 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 576 IPR005202 -
Bma01g00461 584 MobiDBLite consensus disorder prediction 172 187 - -
Bma01g00461 584 SMART DELLA_2 35 108 - -
Bma01g00461 584 Pfam Transcriptional regulator DELLA protein N terminal 35 102 IPR021914 -
Bma01g00461 584 ProSiteProfiles GRAS family profile. 205 575 IPR005202 -
Bma01g00461 584 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00461 Bma-Chr1:3829901 Bma02g00512 Bma-Chr2:10189118 0 dispersed
Bma09g00797 Bma-Chr9:46460303 Bma01g00461 Bma-Chr1:3829901 6.75E-55 dispersed
Bma03g00439 Bma-Chr3:3354842 Bma01g00461 Bma-Chr1:3829901 2.45E-72 transposed
Bma04g00395 Bma-Chr4:3230136 Bma01g00461 Bma-Chr1:3829901 6.67E-54 transposed
Bma06g00126 Bma-Chr6:1705318 Bma01g00461 Bma-Chr1:3829901 4.76E-57 transposed
Bma06g01086 Bma-Chr6:47704024 Bma01g00461 Bma-Chr1:3829901 0 transposed
Bma10g00631 Bma-Chr10:8680757 Bma01g00461 Bma-Chr1:3829901 2.63E-65 transposed
Bma14g01585 Bma-Chr14:32684803 Bma01g00461 Bma-Chr1:3829901 4.18E-70 transposed
Bma01g00461 Bma-Chr1:3829901 Bma06g01070 Bma-Chr6:47558156 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56647 PF03514 GRAS 3.50E-135 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00461 K14494 - tcc:18609825 816.609