Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00478 | ATGGCGGTTTTACCTTCGAGCTCTTCGATTTTGGAGCTATCAATATCTATTCCTGGATTTTCTTCTTATCCACCCTCATCCGTGAGAGATTTGGACATAAATCAGGTACCGGCGGATGAAGACTGGATGACTGCGAGCTTGGAAGACGAGGAAGAAAGCTTCAACGAAGGCCCTCCGCGTAAAAAGCTTCGTCTCACCATAGAACAGTCTCGTCGTCTTGAGGAAAGCTTCAGACAAAACCATACCTTAAATCCTAAGCAGAAAGAGATTCTGGCTATGGAGTTGAAGCTCAGGCCTCGTCAAGTAGAGGTTTGGTTTCAGAACAGAAGGGCCAGGAGCAAACTGAAGCAAACGGAGATGGAATGTGAGCACTTGAAGAGATGGTTTGGTGCATTGACTGAGCAGAACAGGTTGCTAAAAAAGGAAGTAGAAGAATTAAGGGCAATGAAGGTTAGCCCTCCTACCGTAATCTCCCCACACTCGTGCGAGCCACTCCCAGCCTCGACTCTAACCATGTGTCCACGGTGCGAACGTGTGTCGGCTAACATGGCTTCTACAAAATCCAATATCACCTCACGACCATCACCGGCAGCTTGCTAA | 600 | 47.83 | MAVLPSSSSILELSISIPGFSSYPPSSVRDLDINQVPADEDWMTASLEDEEESFNEGPPRKKLRLTIEQSRRLEESFRQNHTLNPKQKEILAMELKLRPRQVEVWFQNRRARSKLKQTEMECEHLKRWFGALTEQNRLLKKEVEELRAMKVSPPTVISPHSCEPLPASTLTMCPRCERVSANMASTKSNITSRPSPAAC | 199 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3922706 | 3924835 | - | Bma000654.1 | Bma01g00478 | 74995 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00478 | 199 | Pfam | Homeodomain | 60 | 114 | IPR001356 | GO:0003677 | |
Bma01g00478 | 199 | SMART | halz | 116 | 159 | IPR003106 | GO:0006355|GO:0043565 | |
Bma01g00478 | 199 | SUPERFAMILY | Homeodomain-like | 49 | 117 | IPR009057 | - | |
Bma01g00478 | 199 | Gene3D | - | 52 | 123 | - | - | |
Bma01g00478 | 199 | ProSitePatterns | 'Homeobox' domain signature. | 91 | 114 | IPR017970 | GO:0000981|GO:0006355 | |
Bma01g00478 | 199 | PANTHER | - | 1 | 186 | - | - | |
Bma01g00478 | 199 | SMART | HOX_1 | 58 | 120 | IPR001356 | GO:0003677 | |
Bma01g00478 | 199 | Pfam | Homeobox associated leucine zipper | 116 | 150 | IPR003106 | GO:0006355|GO:0043565 | |
Bma01g00478 | 199 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 | 1 | 186 | - | - | |
Bma01g00478 | 199 | ProSiteProfiles | 'Homeobox' domain profile. | 56 | 116 | IPR001356 | GO:0003677 | |
Bma01g00478 | 199 | Coils | Coil | 129 | 149 | - | - | |
Bma01g00478 | 199 | CDD | homeodomain | 59 | 117 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00478 | Bma-Chr1:3922706 | Bma10g00168 | Bma-Chr10:1446294 | 3.22E-45 | dispersed | |
Bma01g00478 | Bma-Chr1:3922706 | Bma06g00325 | Bma-Chr6:6236831 | 6.38E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56649 | PF00046 | Homeodomain | 3.80E-16 | CL0123 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00478 | K09338 | - | qsu:112022281 | 303.908 |