Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00478 ATGGCGGTTTTACCTTCGAGCTCTTCGATTTTGGAGCTATCAATATCTATTCCTGGATTTTCTTCTTATCCACCCTCATCCGTGAGAGATTTGGACATAAATCAGGTACCGGCGGATGAAGACTGGATGACTGCGAGCTTGGAAGACGAGGAAGAAAGCTTCAACGAAGGCCCTCCGCGTAAAAAGCTTCGTCTCACCATAGAACAGTCTCGTCGTCTTGAGGAAAGCTTCAGACAAAACCATACCTTAAATCCTAAGCAGAAAGAGATTCTGGCTATGGAGTTGAAGCTCAGGCCTCGTCAAGTAGAGGTTTGGTTTCAGAACAGAAGGGCCAGGAGCAAACTGAAGCAAACGGAGATGGAATGTGAGCACTTGAAGAGATGGTTTGGTGCATTGACTGAGCAGAACAGGTTGCTAAAAAAGGAAGTAGAAGAATTAAGGGCAATGAAGGTTAGCCCTCCTACCGTAATCTCCCCACACTCGTGCGAGCCACTCCCAGCCTCGACTCTAACCATGTGTCCACGGTGCGAACGTGTGTCGGCTAACATGGCTTCTACAAAATCCAATATCACCTCACGACCATCACCGGCAGCTTGCTAA 600 47.83 MAVLPSSSSILELSISIPGFSSYPPSSVRDLDINQVPADEDWMTASLEDEEESFNEGPPRKKLRLTIEQSRRLEESFRQNHTLNPKQKEILAMELKLRPRQVEVWFQNRRARSKLKQTEMECEHLKRWFGALTEQNRLLKKEVEELRAMKVSPPTVISPHSCEPLPASTLTMCPRCERVSANMASTKSNITSRPSPAAC 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3922706 3924835 - Bma000654.1 Bma01g00478 74995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00478 199 Pfam Homeodomain 60 114 IPR001356 GO:0003677
Bma01g00478 199 SMART halz 116 159 IPR003106 GO:0006355|GO:0043565
Bma01g00478 199 SUPERFAMILY Homeodomain-like 49 117 IPR009057 -
Bma01g00478 199 Gene3D - 52 123 - -
Bma01g00478 199 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Bma01g00478 199 PANTHER - 1 186 - -
Bma01g00478 199 SMART HOX_1 58 120 IPR001356 GO:0003677
Bma01g00478 199 Pfam Homeobox associated leucine zipper 116 150 IPR003106 GO:0006355|GO:0043565
Bma01g00478 199 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 186 - -
Bma01g00478 199 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Bma01g00478 199 Coils Coil 129 149 - -
Bma01g00478 199 CDD homeodomain 59 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00478 Bma-Chr1:3922706 Bma10g00168 Bma-Chr10:1446294 3.22E-45 dispersed
Bma01g00478 Bma-Chr1:3922706 Bma06g00325 Bma-Chr6:6236831 6.38E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56649 PF00046 Homeodomain 3.80E-16 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00478 K09338 - qsu:112022281 303.908