Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00482 ATGGCTGACATGAAAGATAAGGTCAAGGGTTTCATGAAAAAGGTTAACGATCAGTTCTCGTCGTCTTCTTCTGGGAAATTCAAAGGGCAAGGTCGAGTTTTAGGCTCGTCTTCATCCGAATCCGCTAATCCTGTTTATTACCGATCGGAGCAGAATCTCAATTCCAAGCCTACTAATCCTGCTCCTCCCGTGAGTTCTAAACCTTCGTCTGAAAAACCTCTTATTCCCACTAAGAATAAATCATTATTAGCGAATAACTCGAATTCAGATCTTAAGCCGGTTAATGGGTTTGACCCATTTGACTCGTTGATCACTTCTGGGAAGAGATCAAAAAATGGGTATTCGATTGATGTGTATGAATGTCCCATTTGTGGGAAATCTTACAGGTCTGAAGAAGAAGTGTCTATGCATGTGGATAGCTGTGTCGATAATTCAGTTGAAAATAACGGGGAAAGTGGAGCTTCTGGATTGCCCAATAACGAGGCTGAGGCTTGCGTTGCTAATTTCTTATCAGCGAAGCCGACAGAAGGCTCCATTGAAGTTCTTTTGAAGCTTGTGAGAAACATAGTGAGGGAGCCAGAGAATTCGAAGTTTAGGAGGATTAGGATGAGTAATCCGAAGATTCGGGAGGCAATTGGTACACGAGTATTCTTTTCCGTCCCGGAAAGTGTAGCGGCGAAAATAGAGATACCCGATTCATTCTATAACCTCTCACTTCAAGAGCTGAAAAGAGAGGCCGATTTGAGGAAGAAAAAGATGGAGTCGTCCCAACTTTTGATCCCCAAATCATACAAGGAAAAGCAGGCAAACGCAGTCCGAAGAAGATACAAAAAAACTATGATTAGGATTCAGTTTCCTGATGGAGTGGTTCTCCAAGGCGTCTTTGCTCCTTGGGAGTCAACTACTGCCTTGTATGAGTTTGTAAGGTCTGCACTAAAAGAACCCGGCCTGGAGTTTGAGCTGTTACATCCCGTTGTTGTCAGACGCAGAGTTATCCCTCGACGCCCCGTCGGAGCGAGCGAGAAGGTGATTACTTTAGAAGAAGAGGATTTGGTACCATCGGCTCTTATCAAGTTCAGACCAATCGAGACAGAATCCGTCGTCTTCACTGGTTTATGCAACGACCTCCTAGAAATGATTGAACCAGTCCCAAATGGCTCTGCATAA 1167 44.13 MADMKDKVKGFMKKVNDQFSSSSSGKFKGQGRVLGSSSSESANPVYYRSEQNLNSKPTNPAPPVSSKPSSEKPLIPTKNKSLLANNSNSDLKPVNGFDPFDSLITSGKRSKNGYSIDVYECPICGKSYRSEEEVSMHVDSCVDNSVENNGESGASGLPNNEAEACVANFLSAKPTEGSIEVLLKLVRNIVREPENSKFRRIRMSNPKIREAIGTRVFFSVPESVAAKIEIPDSFYNLSLQELKREADLRKKKMESSQLLIPKSYKEKQANAVRRRYKKTMIRIQFPDGVVLQGVFAPWESTTALYEFVRSALKEPGLEFELLHPVVVRRRVIPRRPVGASEKVITLEEEDLVPSALIKFRPIETESVVFTGLCNDLLEMIEPVPNGSA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3947289 3949858 - Bma000658.1 Bma01g00482 74999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00482 388 SUPERFAMILY Ubiquitin-like 249 359 IPR029071 -
Bma01g00482 388 MobiDBLite consensus disorder prediction 15 60 - -
Bma01g00482 388 SUPERFAMILY PUG domain-like 172 214 IPR036339 -
Bma01g00482 388 CDD PUB 164 215 - -
Bma01g00482 388 SMART PGNneu 177 252 - -
Bma01g00482 388 Pfam UBX domain 275 355 IPR001012 GO:0005515
Bma01g00482 388 MobiDBLite consensus disorder prediction 70 90 - -
Bma01g00482 388 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 214 - -
Bma01g00482 388 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 215 385 - -
Bma01g00482 388 Gene3D - 268 361 - -
Bma01g00482 388 Gene3D - 168 225 - -
Bma01g00482 388 MobiDBLite consensus disorder prediction 1 90 - -
Bma01g00482 388 Pfam PUB domain 175 213 IPR018997 -
Bma01g00482 388 ProSiteProfiles UBX domain profile. 274 359 IPR001012 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00482 K14011 UBXN6, UBXD1; UBX domain-containing protein 6 - sspl:121759601 352.443
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g481 . . Bda01g01802 . . . . . . . . . . . . . Cpe01g01835 . . . . . . . . . . . . . . . . Cone6ag0375 Cone9ag0404 . . . . . . . . . Bpe02g01976 Bma01g00482 . . . Cmo15g01021 . Cma15g00974 . Car15g00920 Cpe13g00353 . Bhi12g00933 . . . Hepe02g2628 . . Cla01g00631 Cam01g0659 Cec01g0650 Cco01g0677 Clacu01g0647 Cmu01g0621 Cre09g1883 Lsi09g00681 . . Cme09g01355
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007191 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56650 PF00789 UBX 3.30E-06 CL0072 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00482 Bma_Chr01 FPKM 13.845647 15.928115 5.362324 5.856911 8.08237 8.697304 7.667706 2.691045 2.216012 3.048219