Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00490 ATGAGAGATCCAATAGTGAAAAAGGCCATAAGCAGCCTGGGAAGGGGCTTTGATTTAACCTCCGATTTCAAGCTCAAATTCTGCAAAGGCCATGAAAGATTGATTCTCCTCAACGAATTGGAAAAAGGGGAGCTTTTAGTCCCCGGTTTTGGCTCCGTCGGAGAAGTTTCAGTCGACATAAAATGCAACAAAGGCGATCGTACCCGCTACCAGTCCGATATTCTCAGCTTCAACGAAATGTCTGAACTTTTCAACCAAAAAAGTTCAATTTCCGGAAAGATTCCATCGGGATTCTTCAACTCCATGTTTGGATTTCAAAGTGGGTGTTGGGCAAGTGATGCAGGGAACACGAAGCATTTAGGCATTGATGGAATCTTCATTACGCTTTTCGATATTCATATCGACCGCTATCCTCTCGTTCTCTCCGACAAAGTCCGGCGAGCCGTTCCGACCACCTGGGATCCGGGTGCACTTGCCAGATTCATAGATAAGTATGGGACCCATATAATCGTAGGATTGAGCATAGGAGGGCATGATGTTGTTCTAGTGAGGCAAGAAAAAACATCAAAATTAGAAGCATCAGAGCTGAAGAAACACCTTTATGATCTTGGAGATCAGCTTTTCACTGGAACCTGCAATTTTTCACCAGCTAAAGACCATCGAACTAAGCTACCTCAGGCTTTCAATTTGTTTGATCCACAAACCGTGGCTCTCACCAACTTCTCATCTGTCAGCACCAAAGATGGAATAACAGTTATATGCTCAAAGAAAGGAGGATATACAACAGTAAATACCCACTGTGAATGGCTTCCAACAGTGCCTTCCTCTCCTGACGCAATTTACTTTAGCTTCATCCCCATCACCTCTCTCCTAAATGGTGCCCCAGGAAAAGGCTTTCTCTCTCATGCCATCAACCTTTACCTTCGCTACAAACCTCCAATAGGAGACTTACACTACTTTCTCGACTTCCAAGTACACAAGATTTGGGCTCCAATTCACAATGAGCTGCCCCTAAATCCAGCTCCCAACATGACTTCTTCTTCACCTGCCCTCCACTTCAACTTGATGGGTCCTAAGCTTTACGTTAACACTTCCCTGGTTACGGCTGGGAAGAGACCTGTCACAGGAATGAGACTCTATCTTGAAGGCCTAAAATGTAACAGATTAGCCATACACATCCAACATCTATCAAACACACCATTCTTCCTAGAAAACAAGATAGAAGATGACACGTCATCATATTGTAGAGGATCAGAAGAGAATGGCGAAGAAGGGTACCTGGAATCAATCGATGGAAAAAGATTCTCCCATGTCTGTACAGCTCCAGTCAAATATGATCCAAAATGGGTTTCAGAGGAAGATACATCTTTCATAGTAACTGGAGCTCAACTACACATATTGAAAAAGGAAGACTCAAGAAGTGTTCTCCATCTCAGACTTTTCTACTCCAAAGTCTCAGATTCTCATGTTGTTCAATCAAACTGGGCAAGAGGCTCCTCTAAGTTTTCTCAGAAATCCGGGATTTTCTCCGCAATAAGCATGTCAATTTCCGGCAACCCGGTCAAGGAGAAACAAGAAGCTGTAGTGGTTGATTCGAGCATTTTCCCTGGTGGACCGCCAGTGCCAATACAGACTCAGAAGCTTCTGAGGTTTGTTGATGTTTCAGAGATTTATAAAGGCCCTCAGGATAGTCCTGGACATTGGTTAGTGACTGGAGCCAGGCTTTATTTGGAGAAGGGAAAGATATGTTTGCATGTTAAATTTTCTCTGTTACACATTTGTTCGTTATAG 1791 43.5 MRDPIVKKAISSLGRGFDLTSDFKLKFCKGHERLILLNELEKGELLVPGFGSVGEVSVDIKCNKGDRTRYQSDILSFNEMSELFNQKSSISGKIPSGFFNSMFGFQSGCWASDAGNTKHLGIDGIFITLFDIHIDRYPLVLSDKVRRAVPTTWDPGALARFIDKYGTHIIVGLSIGGHDVVLVRQEKTSKLEASELKKHLYDLGDQLFTGTCNFSPAKDHRTKLPQAFNLFDPQTVALTNFSSVSTKDGITVICSKKGGYTTVNTHCEWLPTVPSSPDAIYFSFIPITSLLNGAPGKGFLSHAINLYLRYKPPIGDLHYFLDFQVHKIWAPIHNELPLNPAPNMTSSSPALHFNLMGPKLYVNTSLVTAGKRPVTGMRLYLEGLKCNRLAIHIQHLSNTPFFLENKIEDDTSSYCRGSEENGEEGYLESIDGKRFSHVCTAPVKYDPKWVSEEDTSFIVTGAQLHILKKEDSRSVLHLRLFYSKVSDSHVVQSNWARGSSKFSQKSGIFSAISMSISGNPVKEKQEAVVVDSSIFPGGPPVPIQTQKLLRFVDVSEIYKGPQDSPGHWLVTGARLYLEKGKICLHVKFSLLHICSL 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4016697 4020840 - Bma000666.1 Bma01g00490 75007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00490 596 PANTHER OS02G0736300 PROTEIN 3 594 - -
Bma01g00490 596 Pfam MAC/Perforin domain 99 307 IPR020864 -
Bma01g00490 596 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 321 IPR020864 -
Bma01g00490 596 SMART MACPF_8 117 309 IPR020864 -
Bma01g00490 596 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 3 594 IPR044663 GO:0006952|GO:0012501|GO:2000031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00490 - - - qsu:111999816 878.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00490 Bma06g01133 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00490 Bma-Chr1:4016697 Bma14g01560 Bma-Chr14:32068736 9.86E-114 dispersed
Bma04g00992 Bma-Chr4:16109576 Bma01g00490 Bma-Chr1:4016697 0 transposed
Bma14g01006 Bma-Chr14:11696845 Bma01g00490 Bma-Chr1:4016697 2.27E-166 transposed
Bma01g00490 Bma-Chr1:4016697 Bma06g01133 Bma-Chr6:48229842 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g515 Blo01g00773 Blo16g00758 Bda01g01794 Bda11g00189 Bpe13g01005 . . . . . . . . . . . Cpe01g01853 . . . . . . . . . . . . . . . . Cone6ag0353 . . Csa05g01977 . . . . . Bda11g00189 . Bpe02g01969 Bma01g00490 Bma06g01133 . Cmo04g02227 . Cma04g02134 . Car04g02071 . . . Bhi12g00955 . . . Hepe02g2611 . Lcy10g1378 Cla01g00646 Cam01g0674 Cec01g0665 Cco01g0693 Clacu01g0662 Cmu01g0635 Cre09g1870 Lsi09g00697 . Chy09g00812 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007498 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00490 Bma_Chr01 FPKM 15.832184 14.925921 17.584883 16.702974 19.678967 22.20126 20.319336 23.1213 24.445194 24.071522