Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00495 ATGAGGAAGCCTCATTTGGGTTTTGGGGGTTTCTTCATAATATTGACGTTTTTGCTCCTGCTCCTCTTCAATGTTTCCGTTCACTCTCAACCTTGCGGCGACAAGGCTGCAATGGAGGCTTTGAAAAATAGCATTGGAGAACCGAGCTCTTTTGGATGGACCGACTCCAATTGCTGCAATTGGTCTCATGTGTTTTGTAACTCTAACAGGGTTTCATCCATTCAAATCGGAAACCAAAATGTGTCCGGCTCACTCCCTCCTGAACTTATTAATCTCTCCGCTCTAACGCGATTCGAGGTTCATAGCAACAGTCTGACTGGCTCCTTTCCAAACTTACCCGGAACGTTGACAACCCTTTTGGCCCACGGCAACCAGTTTACTTCCTTCCCCATCGATTTCTTCGCTCACAAATCGGCGTTGGAAGAGATAGACATCGACAACAACCCCTTCTCGACATGGCAAATTCCGGAAAGTATCCAAGACGCTACGTCGTTGGCAAAGTTTTCGGCTAACAAAGCCAACCTCACCGGACGAGTCCCTGCATTTTTCGGCGGCGGCATATTCCCTAGTCTGACCCATTTGCATTTGGCGATGAATAGTCTCGAAGGAGAAATTCCGGAGACTTTTGCAGGTTCTCGAATTCAGTCCTTGTGGTTGAATGGGCAACAGGGCAACACAAAGTTATACGGCTCCATTTCTGTGCTGCAAAATATGACTTATTTAGGCGAGGTTTGGCTGCATGGAAATCAATTCTCCGGTCCTTTACCTGACTTTTCTAACTTGCAGGGGCTGGAGAATTTGAGTTTAAGAGACAACCAACTGACGGGTATTGTTCCGCCATCTCTGGTGAATTGTAACTCCCTTCTGATAGTAAATTTGACGAACAATTTACTTCAAGGGCCGACTCCAAAGTTCGATTCTGAAGTGCAGGTGGATATGAGCTCAGGGTCGAACAGTTTCTGCACGGATACTCCAGGCGAGCCCTGCGACGCTCGTGTTTATGCTCTGCTATCGGTCGCCCAAGAACTGGGCTACCCATCAATTTTTGCAAAAGCTTGGAAGCTTAACGACCCTTGTAAGAGCTGGACTGGTATTACATGCGATGGGACTGGAAACATCACCATTATCAATTTCACTGGCAGGAACCTAAATGGTACAATTTCTCCAAGCTTTTCTTTGCTTACGTCTGTCAAAAGTTTGTTTCTCTCAAACAATTCTTTAACTGGTGTTATACCGCCTGAGCTTACAACCATGCCTAATCTTGTTGAATTGGATGTTTCTAATAACAACCTTTTTGGCAAAGTGCCATCTTTTTTGAAGAATGTGGTTGTGAGGACTGATGGTAATCCAGATATTGGTAAGGACAGAAGTAGTGTATCTTCGACTGGGGAAGGTAGAAAATCTAGGACTGGATTGATTGTTGGGTCTGTTGTTGGAACTATTCCCGGATTGCTTTTAGTAGGGGCTGTAGCTTTCTTTTTGTATAGTAAAAGACAAACGCATAGAGGTAGAGGACAAGTTTCGAATACAGCGGTGGTTCCTGGCGGAGGAAAGGCGTTCGATAGTCCTTCGAGCATTCTGGCAGGGCCGAGCAACATTCACATTGTTGAGGCTGGAAGTATGTCTATGTCTTTTCAGGTTTTGAGGAGTGTGACGAATAATTTCAGTGAAGAAAATGTGTTGGGGAGAGGGGGTTTTGGGTCTGTTTACAAGGGCGATTTGCACGGCACCCAAATTGCAGTCAAGAGGATGGAGCCTGGAGGGGTGACCGAGAAGGGTCTTAACGAGTTTAAGGCTGAGATTACAGTTTTAACGAGTGTTCGACATAGAAATTTGGTGGGACTTCTCGGATATTGCTTGGATGGACATGAGAGGCTTCTTGTTTATGAATATATGCCTCAAGGACCTCTTAGTAGACATCTTTTTGACTGGAAAGATGAAGGAATAGAGCCCCTTGAGTGGACGAGACGACTTGCTATCGCATTGGACGTGGCCCGAGGTGTTGAATACTTGCACAGTTTGGCCAATCAATGTTTTATTCATCGCGATCTTAAACCATCCAACATTCTTCTCGGAGACGATATGCGTGCCAAAGTGGCGGACTTTGGGCTGGTAAAGCTTGCTCAGGAAGGAATATCATCTGTCGAAACAAGACTTGTCGGGACATTCGGCTATCTTGCTCCTGAGTATGCAGTGACTGGACGGGTAACGACCAAGATTGATGTGTATAGCTTCGGAGTGATTTTAATGGAGATGATCACAGGCGGAAAAGCGGTGGACGGAAGCTTGCATTTAGTGTCATGGTTCCAAAGAATGTCGGTCGAGGAAGGCTTAAACAAAATGCTAGACCCGACAATTGGCATAAATGAAGAGACCCTTTGCAGCATTGGTAGAGTAGCTGAATTGGCTAGCCACTGCTGCGCAAGGGAGCCGCACCAACGGCCCGACATGGGCCATATCGTCAACGTCCTTTCTTCCCTGGTGGAAGTGTGGAAGCCAGTAGAGCCTCGTCCCAAACAGGTGACCGGGATTGACTTCAATATGTCGTTAAAAGAGGCCGTCGAGAGGTGGCAGGCCCTTGGAGGAAGTACCGACTTGGACGAACATTCTTTTTCTTCTTCAACACCTTTTCTTTTGAGGGGAGAAGGTAATGGATTTCTTTGA 2664 46.28 MRKPHLGFGGFFIILTFLLLLLFNVSVHSQPCGDKAAMEALKNSIGEPSSFGWTDSNCCNWSHVFCNSNRVSSIQIGNQNVSGSLPPELINLSALTRFEVHSNSLTGSFPNLPGTLTTLLAHGNQFTSFPIDFFAHKSALEEIDIDNNPFSTWQIPESIQDATSLAKFSANKANLTGRVPAFFGGGIFPSLTHLHLAMNSLEGEIPETFAGSRIQSLWLNGQQGNTKLYGSISVLQNMTYLGEVWLHGNQFSGPLPDFSNLQGLENLSLRDNQLTGIVPPSLVNCNSLLIVNLTNNLLQGPTPKFDSEVQVDMSSGSNSFCTDTPGEPCDARVYALLSVAQELGYPSIFAKAWKLNDPCKSWTGITCDGTGNITIINFTGRNLNGTISPSFSLLTSVKSLFLSNNSLTGVIPPELTTMPNLVELDVSNNNLFGKVPSFLKNVVVRTDGNPDIGKDRSSVSSTGEGRKSRTGLIVGSVVGTIPGLLLVGAVAFFLYSKRQTHRGRGQVSNTAVVPGGGKAFDSPSSILAGPSNIHIVEAGSMSMSFQVLRSVTNNFSEENVLGRGGFGSVYKGDLHGTQIAVKRMEPGGVTEKGLNEFKAEITVLTSVRHRNLVGLLGYCLDGHERLLVYEYMPQGPLSRHLFDWKDEGIEPLEWTRRLAIALDVARGVEYLHSLANQCFIHRDLKPSNILLGDDMRAKVADFGLVKLAQEGISSVETRLVGTFGYLAPEYAVTGRVTTKIDVYSFGVILMEMITGGKAVDGSLHLVSWFQRMSVEEGLNKMLDPTIGINEETLCSIGRVAELASHCCAREPHQRPDMGHIVNVLSSLVEVWKPVEPRPKQVTGIDFNMSLKEAVERWQALGGSTDLDEHSFSSSTPFLLRGEGNGFL 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4057983 4060797 - Bma000672.1 Bma01g00495 75012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00495 887 Gene3D Transferase(Phosphotransferase) domain 1 632 836 - -
Bma01g00495 887 Pfam Leucine rich repeat N-terminal domain 333 368 IPR013210 -
Bma01g00495 887 Pfam Leucine rich repeat N-terminal domain 34 67 IPR013210 -
Bma01g00495 887 Gene3D Ribonuclease Inhibitor 33 328 IPR032675 -
Bma01g00495 887 Pfam Leucine Rich repeats (2 copies) 395 436 IPR025875 -
Bma01g00495 887 SUPERFAMILY L domain-like 65 438 - -
Bma01g00495 887 CDD STKc_IRAK 561 827 - -
Bma01g00495 887 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
Bma01g00495 887 Gene3D Phosphorylase Kinase; domain 1 526 631 - -
Bma01g00495 887 SUPERFAMILY Protein kinase-like (PK-like) 533 824 IPR011009 -
Bma01g00495 887 PANTHER OSJNBA0070M12.3 PROTEIN 14 872 - -
Bma01g00495 887 PANTHER RECEPTOR PROTEIN KINASE TMK1 14 872 - -
Bma01g00495 887 ProSitePatterns Protein kinases ATP-binding region signature. 561 582 IPR017441 GO:0005524
Bma01g00495 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672|GO:0006468
Bma01g00495 887 SMART serkin_6 555 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00495 887 Pfam Protein tyrosine and serine/threonine kinase 558 824 IPR001245 GO:0004672|GO:0006468
Bma01g00495 887 ProSiteProfiles Protein kinase domain profile. 555 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00495 - - K00924 csv:101210025 1106.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00495 Bma06g01141 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00495 Bma-Chr1:4057983 Bma02g01014 Bma-Chr2:51290606 0 dispersed
Bma01g00495 Bma-Chr1:4057983 Bma06g01141 Bma-Chr6:48311782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66255 PF07714 PK_Tyr_Ser-Thr 3.00E-46 CL0016 Bma PK