Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00496 ATGGCCAAGGGTCGAAGCTTCCAAATCAAAGCAACCCCAGTCACAGTGTTTGCTCACTTGGCGGCCATAGCTGTTGCCACACTTGTGCTTGTTTGGCTTCTTCATTTCAGAGGAGGGTTTGCGTTCAAATCTGTCAACAAAGAGAAGATTTTAAACGTGAGTTGTTCTTCATGTTTCTCATTTCAAACGCCTAAAAAAAACTGTAAAAAAAAATTCTCAATAATGGCGTACAAGACGATGCCAGGAAGAAAAGACAGCAGAAAAGTGGTGCACATGCTGCTGCATCTGATTGCTCTAGCAGCTGGAGTTCTTGGGGTTTCTTTAGCTTTCAAGTTTCATCGGGAGACGTCTCTCCCAAGCGTTGTTACTCTCCATTCCTGGCTTGGTATTACTGCCATTTCTTTGTATGCGTTGCAGTTTATGATCATCTTTGTGAGGCAGTGGGTGCTGAGTTTTATGATGTACTTATTTCCTGGGGGACAAAAATGGAGGAGAGCAGCTTCGCTTCCATGGCACGTATATTTTGGGATGTTCATCTTCTTCGTAGCAGTTTGCACAGCTGAGACTGGTTTGCTTCAAAGATTCAACGTCTTGTTCCTCGGCAGATCCCAAGAAGGACTCATCGTCAACTTCGCCGCCGTCTCCATCGTTCTTTTTGCTGCCTCCGTTGCCCTTACTGTCATTCTCCCTTGA 693 45.17 MAKGRSFQIKATPVTVFAHLAAIAVATLVLVWLLHFRGGFAFKSVNKEKILNVSCSSCFSFQTPKKNCKKKFSIMAYKTMPGRKDSRKVVHMLLHLIALAAGVLGVSLAFKFHRETSLPSVVTLHSWLGITAISLYALQFMIIFVRQWVLSFMMYLFPGGQKWRRAASLPWHVYFGMFIFFVAVCTAETGLLQRFNVLFLGRSQEGLIVNFAAVSIVLFAASVALTVILP 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4061480 4062566 - Bma000673.2 Bma01g00496 75013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00496 230 Pfam Eukaryotic cytochrome b561 73 194 IPR006593 -
Bma01g00496 230 PANTHER CYTOCHROME B561-RELATED 6 230 IPR043205 GO:0016491
Bma01g00496 230 SMART 561_7 72 191 IPR006593 -
Bma01g00496 230 Gene3D - 6 230 - -
Bma01g00496 230 ProSiteProfiles Cytochrome b561 domain profile. 17 228 IPR006593 -
Bma01g00496 230 PANTHER CYTOCHROME B561 FAMILY PROTEIN, EXPRESSED 6 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00496 K08360 CYB561; transmembrane ascorbate-dependent reductase [EC:7.2.1.3] - zju:107429205 216.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00496 Bma-Chr1:4061480 Bma08g00335 Bma-Chr8:5843934 8.88E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g538 Blo01g00777 . Bda01g01786 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01963 Bma01g00496 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012392 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 29