Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00505 | GATCCAGACGCAGAAGTGGTTTCTCTATCTCCAAGGACTTTACTGGAATCAGATCGGTACGTGTGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAGAATCTGCAGATGCATAGGAGGAGGCATAAGGTGCCGTGGAAGTTGTTGAAGAGGGAGACGGAGGAGGTGAAGAAGAAGGTGTTTGTTTGCCCTGAGCCGACGTGCTTGCACCACGATCCTTGCCATGCTCTCGGCGACCTCGTCGGAATCAAAAAACATTTCCGGCGTAAACACAGCAATCACAAGCAGTGGACTTGTGACAGATGCTCCAAAAGTTACGCCGTTCAATCCGATTACAAAGCCCATCTCAAAACTTGTGGCACTAGAGGCCACTCCTGCGACTGTGGCCGTGTGTTTTCCAGAGTGGAGAGTTTCATCGAGCACCAAGATGCTTGCACTGTCCGGCAGGTGCGGCCTGGGTTTCCGGTGACCCAGCCAGCCTGCTCTTCCCGATCAGCTTCTAGCACTAGCCCTTCCACTGACGCAGATTTCGGCAAGGCTACGATGCCAAAGCTTCTCAGCAGGCCAACTCAACCAATATTCTTGAGATCCGATCAAAGGAATTATAATTATTCTTCCTCTACGTCTGGTTTCCAAGAACATAATCTCGAACTTCAGCTCCTTCCGATGTCGCCATATCCGGAAGAAATCTTTGCCACCCACCTGAAACTTTCGATCGGATCATCAACCGAAGGTGGCAGAAAGGAAGAAATAAAGAAACAGGTTTCAGAAACCCGGGAGAAAAATGACATTGTTCCTGCACTGGAAGTGATGAGGTTGAGAGAATATTCAACTGAAGATCTAAGGAAGTTAGCAATGGCTGAAATGGCTTACGCAGAAGAAGCTAGACGAGAAGCCAAACGACAGATCGAAATTGCCGAGATGGAATTCGGAAACGCAAAAAGAATAAGGCAACAAGCCATAGCCGAGCTCGAAAAAGCAGAGATTTTGAAAGAGAACGCAACGAGAAAGATGAGCTCCACCATTCTGCAAATCACTTGCCAAGCATGCAAACGACAATTCCAGCCGCCGTCAAAGGCGGCGCTGGCACAGTCGGACGAGACCTCCCTGGCGATGAGCTACATGTCCTCCGCCACCACCGAAGGCGAGGGAGAATGA | 1158 | 49.57 | DPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETEEVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWTCDRCSKSYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQVRPGFPVTQPACSSRSASSTSPSTDADFGKATMPKLLSRPTQPIFLRSDQRNYNYSSSTSGFQEHNLELQLLPMSPYPEEIFATHLKLSIGSSTEGGRKEEIKKQVSETREKNDIVPALEVMRLREYSTEDLRKLAMAEMAYAEEARREAKRQIEIAEMEFGNAKRIRQQAIAELEKAEILKENATRKMSSTILQITCQACKRQFQPPSKAALAQSDETSLAMSYMSSATTEGEGE | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4159786 | 4161270 | + | Bma000684.2 | Bma01g00505 | 75022 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00505 | 385 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 22 | 42 | IPR013087 | - | |
Bma01g00505 | 385 | PANTHER | OS03G0310200 PROTEIN | 1 | 385 | IPR039288 | GO:0009630 | |
Bma01g00505 | 385 | SMART | c2h2final6 | 97 | 124 | IPR013087 | - | |
Bma01g00505 | 385 | SMART | c2h2final6 | 20 | 42 | IPR013087 | - | |
Bma01g00505 | 385 | SMART | c2h2final6 | 61 | 91 | IPR013087 | - | |
Bma01g00505 | 385 | MobiDBLite | consensus disorder prediction | 158 | 176 | - | - | |
Bma01g00505 | 385 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 20 | 42 | IPR013087 | - | |
Bma01g00505 | 385 | Gene3D | Classic Zinc Finger | 82 | 154 | - | - | |
Bma01g00505 | 385 | SUPERFAMILY | beta-beta-alpha zinc fingers | 19 | 117 | IPR036236 | - | |
Bma01g00505 | 385 | Coils | Coil | 282 | 337 | - | - | |
Bma01g00505 | 385 | Pfam | Zinc-finger of C2H2 type | 20 | 38 | - | - | |
Bma01g00505 | 385 | MobiDBLite | consensus disorder prediction | 158 | 182 | - | - | |
Bma01g00505 | 385 | MobiDBLite | consensus disorder prediction | 361 | 385 | - | - | |
Bma01g00505 | 385 | Gene3D | Classic Zinc Finger | 2 | 64 | - | - | |
Bma01g00505 | 385 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 1 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00505 | Bma-Chr1:4159786 | Bma08g00110 | Bma-Chr8:1337429 | 3.03E-162 | dispersed | |
Bma01g00505 | Bma-Chr1:4159786 | Bma08g00129 | Bma-Chr8:1683055 | 3.03E-162 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56652 | PF12874 | zf-met | 0.021 | CL0361 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00505 | K25871 | - | cpap:110823858 | 526.554 |