Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00505 GATCCAGACGCAGAAGTGGTTTCTCTATCTCCAAGGACTTTACTGGAATCAGATCGGTACGTGTGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAGAATCTGCAGATGCATAGGAGGAGGCATAAGGTGCCGTGGAAGTTGTTGAAGAGGGAGACGGAGGAGGTGAAGAAGAAGGTGTTTGTTTGCCCTGAGCCGACGTGCTTGCACCACGATCCTTGCCATGCTCTCGGCGACCTCGTCGGAATCAAAAAACATTTCCGGCGTAAACACAGCAATCACAAGCAGTGGACTTGTGACAGATGCTCCAAAAGTTACGCCGTTCAATCCGATTACAAAGCCCATCTCAAAACTTGTGGCACTAGAGGCCACTCCTGCGACTGTGGCCGTGTGTTTTCCAGAGTGGAGAGTTTCATCGAGCACCAAGATGCTTGCACTGTCCGGCAGGTGCGGCCTGGGTTTCCGGTGACCCAGCCAGCCTGCTCTTCCCGATCAGCTTCTAGCACTAGCCCTTCCACTGACGCAGATTTCGGCAAGGCTACGATGCCAAAGCTTCTCAGCAGGCCAACTCAACCAATATTCTTGAGATCCGATCAAAGGAATTATAATTATTCTTCCTCTACGTCTGGTTTCCAAGAACATAATCTCGAACTTCAGCTCCTTCCGATGTCGCCATATCCGGAAGAAATCTTTGCCACCCACCTGAAACTTTCGATCGGATCATCAACCGAAGGTGGCAGAAAGGAAGAAATAAAGAAACAGGTTTCAGAAACCCGGGAGAAAAATGACATTGTTCCTGCACTGGAAGTGATGAGGTTGAGAGAATATTCAACTGAAGATCTAAGGAAGTTAGCAATGGCTGAAATGGCTTACGCAGAAGAAGCTAGACGAGAAGCCAAACGACAGATCGAAATTGCCGAGATGGAATTCGGAAACGCAAAAAGAATAAGGCAACAAGCCATAGCCGAGCTCGAAAAAGCAGAGATTTTGAAAGAGAACGCAACGAGAAAGATGAGCTCCACCATTCTGCAAATCACTTGCCAAGCATGCAAACGACAATTCCAGCCGCCGTCAAAGGCGGCGCTGGCACAGTCGGACGAGACCTCCCTGGCGATGAGCTACATGTCCTCCGCCACCACCGAAGGCGAGGGAGAATGA 1158 49.57 DPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETEEVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWTCDRCSKSYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQVRPGFPVTQPACSSRSASSTSPSTDADFGKATMPKLLSRPTQPIFLRSDQRNYNYSSSTSGFQEHNLELQLLPMSPYPEEIFATHLKLSIGSSTEGGRKEEIKKQVSETREKNDIVPALEVMRLREYSTEDLRKLAMAEMAYAEEARREAKRQIEIAEMEFGNAKRIRQQAIAELEKAEILKENATRKMSSTILQITCQACKRQFQPPSKAALAQSDETSLAMSYMSSATTEGEGE 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4159786 4161270 + Bma000684.2 Bma01g00505 75022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00505 385 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Bma01g00505 385 PANTHER OS03G0310200 PROTEIN 1 385 IPR039288 GO:0009630
Bma01g00505 385 SMART c2h2final6 97 124 IPR013087 -
Bma01g00505 385 SMART c2h2final6 20 42 IPR013087 -
Bma01g00505 385 SMART c2h2final6 61 91 IPR013087 -
Bma01g00505 385 MobiDBLite consensus disorder prediction 158 176 - -
Bma01g00505 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 42 IPR013087 -
Bma01g00505 385 Gene3D Classic Zinc Finger 82 154 - -
Bma01g00505 385 SUPERFAMILY beta-beta-alpha zinc fingers 19 117 IPR036236 -
Bma01g00505 385 Coils Coil 282 337 - -
Bma01g00505 385 Pfam Zinc-finger of C2H2 type 20 38 - -
Bma01g00505 385 MobiDBLite consensus disorder prediction 158 182 - -
Bma01g00505 385 MobiDBLite consensus disorder prediction 361 385 - -
Bma01g00505 385 Gene3D Classic Zinc Finger 2 64 - -
Bma01g00505 385 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00505 Bma-Chr1:4159786 Bma08g00110 Bma-Chr8:1337429 3.03E-162 dispersed
Bma01g00505 Bma-Chr1:4159786 Bma08g00129 Bma-Chr8:1683055 3.03E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56652 PF12874 zf-met 0.021 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00505 K25871 - cpap:110823858 526.554