Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00509 ATGGTGAACAGTATAATAACAGTCAATAACAACACAAACGATGCAGTCATCTGCTATGCGCCGACGATGATAACCACAAACGGCATTTGGCAAGGCGACAACCCTTTGGATTACTCCCTTCCCCTCTTCATTTTGCAATTATCACTCGTCGTCATTTTCACTCGCGTCCTCGTTTTCCTGCTCAAACCCTTCCGCCAACCTCGCGTCGTCTCTGAAATCTTGGGTGGAATAGTTTTGGGTCCTTCAGTTCTTGGACGGAGTACCACATTTGCCAACTCCATGTTTCCTCTGAGAAGTGTAATGGTGCTTGAAACAATGGCAAATGTGGGTCTTCTCTATTTTCTCTTCTTAGTCGGAGTGGAGATGGACCTGTCTGTAATTCGTCGAACTGGCCGGAAAGCCATGGCCATAGGCGCCGCGGGAATGGTTCTTCCCTTCATGATAGGAGGCTGCTTCTCCGTCGTCCTCCATAAAACAGATTACTCGATGAGCACAGGCACTTTCATTCTCTTCGTAGGCGTTTCCCTATCCGTCACTGCATTTCCTGTGCTCGCTAGAGTACTTGCAGAGCTAAAACTCATTAACACCGAGCTCGGAAGGGTTGCAATGGCGTCAGCGCTTTTCAATGACATGTGTGCCTGGATACTTCTGGCCATAGCCATTGCTCTTACGGAAAATCAAGATACTTCTTTAGCTTCAATTTGGACCATTTTATCGAGTCTTGGCTTTGTTACCTTCGCCATCTTGGCTGTTCGCCCCGCCATTGGGTGGATAATTAGACGGACGCCGGAGGGTGAACCGTTCAGTGACTTTCATATCTGTCTCGTTCTCACCGGCGTACTGATCTCAGGGTTTATTACGGACGCCATCGGAACCCATTCCATTTTTGGAGCTTTTGTGTTTGGTCTTGTTATTCCAAACGGACCGCTTGGGATTACTTTGATAGAGAAGCTTGAGGATTTTGTTTCAGGGCTTCTACTTCCTCTCTTCTTCGCCATTAGTGGGCTCAAGACTGATATTTCCGCGATTAAAGGACCTCAAACTTGGGGGATTCTACTTCTTCTCATTTTTTTTGCTGGTGCTGGTAAAATTGCAGGCACTCTTGTGGCTTCCCTTTGTTATCACATGCCTTGGAACGAAGGAATCTCTCTGGGTCTGCTCATGAACACCAAAGGCCTCATTGAGATGATCATCCTTAATGTCGGAAAAGACCACCAGGTGTTAGACGATAGGTCATTTGCAACAATGGTGATAGTGTCGCTGATAATGACTGCGCTAATAACCCCAATAGTGACTGTAATTTACAAGCCAGTAAGGAGGTTTACGCCCTACAAAAAGAGGACGATTCAGAGATCCAAACCGGATTCTGAGCTAAGGGTTTTGGTTTGTGTTCATACTCCCAGAAATGTTCCGCCAATCATTAATCTTCTCGAAGCGTCAAACCCAACAAAACGATCCCCCATTTGCATCTACGTACTCCACCTGGTCGAGCTCACCGGCCGTGCCTCCGCCATGCTCATCGTTCACAGCACCCACAAGTCGGGCCGCACCTCCCACAACTCCCAGGCGCAGTCGGACCACATCATCAACGCCTTCGAGAACTACGAGCAGCATGCTGGCTGCGTTTCGGTGCAGCCACTCACTGCCATTTCTCCCTACTCCACCATGCACGAAGACATCTGCAGCTTGGCCGAAGACAAGAGAGTCGCGTTCGTTATAATCCCGTTTCACAAGCAGCAGACGGTGGATGGGGGAATGGAAGTAGCTAACCCAGCTTTTCGAACGGTGAACCAGAATTTGCTGGCCAACGCACCTTGCTCCGTGGGGATTTTGGTGGACCGAGGGTTGAGTGGTTCGACTAGATTGGCTACTACGCAGGTCTCCCACAATGTTGCGGTTCTCTTCTTTGGGGGTCACGACGATAGAGAAGCTCTCTCGTACGCATGGCGGATGTCGGAGCATCCCGGAGTTAGCCTCAACGTGATGCGGTTCGTCCCCGGAAAAGACTCACATTCTGTCTCCAAGCCGAAGGAGATGAAGTCTGATGACCAGAGGCCCCTCCCGGTGGTTACAGGCGTGGAAAGACAAAAGCAACTGGACGACGCGCTGTTGAACGAGTTCAGGATGAAAACAGTGGGCAACAAGTCAGTTGTTTATAGCGAAAAAGTGGCGAATAATGGAGAAGAAACAGTGGCATCAGTAAGATCAATGGGCAACAATCATGATCTGTTCATAGTTGGGAGAGGGCAAGGGACGGTGTCGCCGCTCACGGCCGGGCTGACCGACTGGAGCGAGTGCCCGGAGCTGGGGGCCATTGGAGACCTCCTTGCGGCCTCCGATTTTTCATCCACCGCTTCGGTGTTGGTGGTGCAGCAATACGTCGGAGAAGATCCACACGGGGACGGAGTAGGGACGGTTGATAGCCCTACCGGCCGAGTTGAGGAGCACATGACCCACGCATGGCAAATGAGGGTGAGACCTCAGCCACCGGCAGGGCCTCACCCTGTCTTCTCCTATTAG 2520 50.6 MVNSIITVNNNTNDAVICYAPTMITTNGIWQGDNPLDYSLPLFILQLSLVVIFTRVLVFLLKPFRQPRVVSEILGGIVLGPSVLGRSTTFANSMFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGRKAMAIGAAGMVLPFMIGGCFSVVLHKTDYSMSTGTFILFVGVSLSVTAFPVLARVLAELKLINTELGRVAMASALFNDMCAWILLAIAIALTENQDTSLASIWTILSSLGFVTFAILAVRPAIGWIIRRTPEGEPFSDFHICLVLTGVLISGFITDAIGTHSIFGAFVFGLVIPNGPLGITLIEKLEDFVSGLLLPLFFAISGLKTDISAIKGPQTWGILLLLIFFAGAGKIAGTLVASLCYHMPWNEGISLGLLMNTKGLIEMIILNVGKDHQVLDDRSFATMVIVSLIMTALITPIVTVIYKPVRRFTPYKKRTIQRSKPDSELRVLVCVHTPRNVPPIINLLEASNPTKRSPICIYVLHLVELTGRASAMLIVHSTHKSGRTSHNSQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDICSLAEDKRVAFVIIPFHKQQTVDGGMEVANPAFRTVNQNLLANAPCSVGILVDRGLSGSTRLATTQVSHNVAVLFFGGHDDREALSYAWRMSEHPGVSLNVMRFVPGKDSHSVSKPKEMKSDDQRPLPVVTGVERQKQLDDALLNEFRMKTVGNKSVVYSEKVANNGEETVASVRSMGNNHDLFIVGRGQGTVSPLTAGLTDWSECPELGAIGDLLAASDFSSTASVLVVQQYVGEDPHGDGVGTVDSPTGRVEEHMTHAWQMRVRPQPPAGPHPVFSY 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4189789 4192551 - Bma000688.1 Bma01g00509 75026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00509 839 Gene3D - 479 761 - -
Bma01g00509 839 PANTHER CATION/H + ANTIPORTER 9 827 - -
Bma01g00509 839 Pfam Sodium/hydrogen exchanger family 50 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bma01g00509 839 Gene3D - 42 441 IPR038770 -
Bma01g00509 839 PANTHER CATION/H(+) ANTIPORTER 15 9 827 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00509 - - - pvy:116140351 1225.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00509 Bma-Chr1:4189789 Bma12g00055 Bma-Chr12:1109001 0 dispersed
Bma07g00982 Bma-Chr7:37931621 Bma01g00509 Bma-Chr1:4189789 2.98E-122 dispersed
Bma07g01585 Bma-Chr7:51141633 Bma01g00509 Bma-Chr1:4189789 2.26E-168 dispersed
Bma08g01032 Bma-Chr8:49468348 Bma01g00509 Bma-Chr1:4189789 1.80E-163 dispersed
Bma08g01037 Bma-Chr8:49500249 Bma01g00509 Bma-Chr1:4189789 8.02E-179 dispersed
Bma14g01993 Bma-Chr14:43240494 Bma01g00509 Bma-Chr1:4189789 5.89E-157 dispersed
Bma01g00509 Bma-Chr1:4189789 Bma04g00738 Bma-Chr4:7730755 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g00509 . 11 822 Antiporter Super Family AT2G13620 69.9 0.0e+00 1124.0
Bma01g01881 . 76 824 Antiporter Super Family AT3G53720 69.7 8.9e-294 1006.1
Bma04g00738 . 84 765 Antiporter Super Family AT3G53720 50.3 6.5e-188 654.4
Bma12g00055 . 80 785 Antiporter Super Family AT3G53720 50.1 4.0e-185 645.2
Bma12g00057 . 1 620 Antiporter Super Family AT3G53720 50.9 2.8e-162 569.3
Bma12g00055 . 1 804 Antiporter Super Family AT5G41610 67.0 1.5e-299 1025.4
Bma04g00738 . 7 765 Antiporter Super Family AT5G41610 64.9 3.1e-281 964.5
Bma12g00057 . 1 616 Antiporter Super Family AT5G41610 66.5 7.3e-230 793.9
Bma01g01881 . 1 801 Antiporter Super Family AT5G41610 52.1 4.3e-214 741.5
Bma12g00055 . 1 801 Antiporter Super Family AT4G23700 66.3 4.1e-297 1017.3
Bma04g00738 . 7 764 Antiporter Super Family AT4G23700 61.7 4.7e-269 924.1
Bma12g00057 . 1 616 Antiporter Super Family AT4G23700 60.4 1.6e-208 723.0
Bma04g00738 . 4 779 Antiporter Super Family AT3G17630 71.7 0.0e+00 1085.1
Bma12g00055 . 11 780 Antiporter Super Family AT3G17630 65.2 1.0e-276 949.5
Bma12g00057 . 1 615 Antiporter Super Family AT3G17630 62.7 4.4e-211 731.5
Bma01g01881 . 8 803 Antiporter Super Family AT3G17630 51.8 1.1e-209 726.9
Bma12g00055 . 12 783 Antiporter Super Family AT1G64170 59.1 4.6e-240 827.8
Bma04g00738 . 6 764 Antiporter Super Family AT1G64170 55.4 6.8e-228 787.3
Bma12g00057 . 1 616 Antiporter Super Family AT1G64170 54.6 9.7e-174 607.4
Bma01g00509 . 11 822 Antiporter Super Family AT2G13620 69.9 0.0e+00 1124.0
Bma12g00055 . 12 783 Antiporter Super Family AT1G64170 59.1 4.6e-240 827.8
Bma04g00738 . 6 764 Antiporter Super Family AT1G64170 55.4 6.8e-228 787.3
Bma12g00057 . 1 616 Antiporter Super Family AT1G64170 54.6 9.7e-174 607.4
Bma12g00055 . 1 801 Antiporter Super Family AT4G23700 66.3 4.1e-297 1017.3
Bma04g00738 . 7 764 Antiporter Super Family AT4G23700 61.7 4.7e-269 924.1
Bma12g00057 . 1 616 Antiporter Super Family AT4G23700 60.4 1.6e-208 723.0
Bma12g00055 . 1 804 Antiporter Super Family AT5G41610 67.0 1.5e-299 1025.4
Bma04g00738 . 7 765 Antiporter Super Family AT5G41610 64.9 3.1e-281 964.5
Bma12g00057 . 1 616 Antiporter Super Family AT5G41610 66.5 7.3e-230 793.9
Bma01g01881 . 1 801 Antiporter Super Family AT5G41610 52.1 4.3e-214 741.5
Bma04g00738 . 4 779 Antiporter Super Family AT3G17630 71.7 0.0e+00 1085.1
Bma12g00055 . 11 780 Antiporter Super Family AT3G17630 65.2 1.0e-276 949.5
Bma12g00057 . 1 615 Antiporter Super Family AT3G17630 62.7 4.4e-211 731.5
Bma01g01881 . 8 803 Antiporter Super Family AT3G17630 51.8 1.1e-209 726.9
Bma01g01881 . 76 824 Antiporter Super Family AT3G53720 69.7 8.9e-294 1006.1
Bma04g00738 . 84 765 Antiporter Super Family AT3G53720 50.3 6.5e-188 654.4
Bma12g00055 . 80 785 Antiporter Super Family AT3G53720 50.1 4.0e-185 645.2
Bma12g00057 . 1 620 Antiporter Super Family AT3G53720 50.9 2.8e-162 569.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00509 Bma_Chr01 FPKM 0.805157 1.143235 0.749155 0.763862 1.048924 0.802054 0.990248 6.148028 6.284874 6.506708