Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00541 ATGAAACCATTAAAAACATGGAGATCACTTTTCAGGAAAAGGAATTCCTTCTGTGATGGGGGAATATATGGATGCAAGATGAAACAAATGCCATTTTTTTGTATTTTATGCATAGTAACTTTGTTCATTGTGTACAGAACCACAACTTATCAATATCAAGATACAACGGAAGTAGATGTATCATCTCAAACCTTGAATGGTTTGCCACAAGGCATAATACAAGCCAAATCCGATTTGGAGTTGAGGCCTCTATGGTCAACCAGTAGTTCAAGATCAAAAGTTAATGATTATCGCAATCATAGTTTGCTTGCGATTTCAGTTGGAATCAAGCAAAAGCGTAATGTTGATTCTATTGTGCGGAAGTTCCTTTCAGGGAACTTTTCGATTATTCTTTTTCATTATGATGGCAAAGTAGATGAATGGTGGGATCTTAAATGGAGTAGCAAGGCCATACATATAGTTGGTCAAAACCAAACAAAATGGTGGTTTGCAAAGCGATTTCTGCATCCAGCAGTCGTCTCCGTCTATGATTTCATATTTCTCTGGGATGAAGATCTAGGAGTTGAGCATTTTTCCCCAAAAAGGTACTTGGATATTGTGAAATCAGAAGGTCTTGAAATATCTCAGCCAGCACTGGACCCAAATTCAACGGATATACATCATAGAATCACTGTTCGAGCCAGAACAAAGAAAATACACAGAAGAGTATATGACAAGAGAGGCACTTTGAAGTGTACAGACAATAGTGATGGCCCGCCATGCACGGGATTTGTGGAGGGTATGGCTCCAGTTTTCTCAAGAGCAGCTTGGAACTGTGCTTGGCATCTTATACAGAAAATATGTATTTGTTTTGTCCAGAATGACCTGATCCATGGATGGGGAATGGATATGAAACTTGGTTATTGTGCACAGGGTGACCGGACAGAGAAGGTGGGTATAGTTGACAGTGAATACATCGTCCATAAGGGCATACAGACTTTGGGAGGAGGTGCTTCCTCTGATAAAAACGTAATCTTCTCCCTCCTTTCTTCCACTTATTGGTGTTTATTCGTTTTGGTGTGGAACGATCAGATAAGGAGGCAATCAACGTGGGAGCTTCGAATGTTCAAAGAGAGGTGGAATAAAGCCATAGCAGAGGACAAATACTGGGTCGATCCGTTCAAGCGAGAGACAGATCGGGACGGACGCCGCGTTCTATAG 1200 41.0 MKPLKTWRSLFRKRNSFCDGGIYGCKMKQMPFFCILCIVTLFIVYRTTTYQYQDTTEVDVSSQTLNGLPQGIIQAKSDLELRPLWSTSSSRSKVNDYRNHSLLAISVGIKQKRNVDSIVRKFLSGNFSIILFHYDGKVDEWWDLKWSSKAIHIVGQNQTKWWFAKRFLHPAVVSVYDFIFLWDEDLGVEHFSPKRYLDIVKSEGLEISQPALDPNSTDIHHRITVRARTKKIHRRVYDKRGTLKCTDNSDGPPCTGFVEGMAPVFSRAAWNCAWHLIQKICICFVQNDLIHGWGMDMKLGYCAQGDRTEKVGIVDSEYIVHKGIQTLGGGASSDKNVIFSLLSSTYWCLFVLVWNDQIRRQSTWELRMFKERWNKAIAEDKYWVDPFKRETDRDGRRVL 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4643383 4646457 - Bma000729.2 Bma01g00541 75058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00541 399 Pfam Protein of unknown function (DUF707) 63 378 IPR007877 -
Bma01g00541 399 PANTHER KETOGLUTARATE REDUCTASE TRANS-SPLICING-RELATED PROTEIN, PUTATIVE-RELATED 26 388 - -
Bma01g00541 399 PANTHER OS06G0731900 PROTEIN 26 388 IPR007877 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00541 - - - qsu:112036164 581.637
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00541 Bma14g01823 CCT
Bma01g00541 Bma14g01823 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00541 Bma-Chr1:4643383 Bma02g00603 Bma-Chr2:13642651 8.06E-120 dispersed
Bma01g00541 Bma-Chr1:4643383 Bma14g01023 Bma-Chr14:11945336 2.35E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g637 Blo01g00832 Blo16g01175 Bda01g01741 Bda11g01291 Bpe13g00510 . Bma14g01823 . . Cmo18g00765 . Cma18g00760 . Car18g00695 Sed06g1694 Cpe09g00537 Cpe01g01572 Bhi07g01795 Tan04g0159 Cmetu10g0724 . Hepe10g0049 . . Cla05g02591 Cam05g2782 Cec05g2818 . Clacu05g2784 Cmu05g2632 Cre05g2748 Cone13ag1081 Cone19ag1069 Cone8ag0694 . Lsi04g00600 Csa05g02283 Chy10g00849 Cme10g00581 . . Bda07g01639 Bda11g01291 . Bpe02g01915 Bma01g00541 . . Cmo04g02803 . Cma04g01775 . Car04g01799 . . . . . . . . . . . . . . . . . . . Chy09g00373 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003203 1 4 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 0 1 9 5 0 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00541 Bma_Chr01 FPKM 16.530905 18.146681 11.115121 13.211782 11.946424 10.46544 12.319412 21.336887 18.604528 21.000471