Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00559 ATGGCGTCTACTCGAGAAGCTCACTATAGAGGGGTAAGAAAGAGGCCATGGGGACGATACGCGGCTGAGATTCGCGATCCGTGGAAGAAGACGAGGGTTTGGTTGGGAACCTTTGATACGCCGGAAGAAGCCGCTCTTGCCTACGACGGAGCTGCTAGATCTCTACGGGGAGCTAAAGCTAAGACAAACTTCCCAGCTCCGGTGGCCTCCGGTCTCGCTGTTGATCTGAATGTTCCAACCAGAGCTCAGTGGACTCAGCCGCCGTCTCCCCGCCTGATACTTGGCAATTTCATGGAGACTGGTTCGAGCAACGTAGCCGGGGAGGCTGTTATCGATAGGCGAGCGGCGCCGGCGGCGGAAGAATCTCAGACGGCGTCGTTTTTGGGGCTTGTCCGACGTGGTTTGCCCATTGATCTGAATGAGCCTCCTCCTCTATGGCTTATGTAA 447 56.15 MASTREAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPVASGLAVDLNVPTRAQWTQPPSPRLILGNFMETGSSNVAGEAVIDRRAAPAAEESQTASFLGLVRRGLPIDLNEPPPLWLM 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4901716 4902162 - Bma000747.1 Bma01g00559 75076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00559 148 CDD AP2 7 66 IPR001471 GO:0003700|GO:0006355
Bma01g00559 148 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Bma01g00559 148 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Bma01g00559 148 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 133 - -
Bma01g00559 148 Gene3D AP2/ERF domain 7 66 IPR036955 GO:0003700|GO:0006355
Bma01g00559 148 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Bma01g00559 148 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Bma01g00559 148 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Bma01g00559 148 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Bma01g00559 148 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 1 133 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00559 Bma07g00389 CCT
Bma01g00559 Bma11g00414 CCT
Bma01g00559 Bma07g00389 ECH
Bma01g00559 Bma11g00414 ECH
Bma01g00559 Bma14g01008 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00559 Bma-Chr1:4901716 Bma04g00350 Bma-Chr4:2840386 7.33E-63 dispersed
Bma01g00559 Bma-Chr1:4901716 Bma07g00389 Bma-Chr7:4768949 3.13E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56655 PF00847 AP2 2.00E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00559 - - jre:108984175 211.846