Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00565 TCCGATCATTCCTCTATTGTGTCCATGAATTTATTTGTGGCGCTACTTTGTGGTTGTATTGTGATTGGTCATCTTCTCGAGGAGAATCGCTGGATGAATGAGTCAATTACGGCTCTACTGATTGGACTAAGCACTGGAGTCGTCATTCTGCTCATTAGTGGGGGGAAAAATTCACATTTACTAGTCTTCAGTGAAGATCTTTTCTTTATATATCTTCTGCCACCTATTATATTCAATGCCGGGTTCCAGGTGAAAAAGAAGCAGTTTTTCAGAAACTTTAGTACAATTATGCTCTTTGGGGCAATTGGCACATTAATCTCTTGTTGCGTCATTTCATTAGGTGTTATACAATTTTTTAAGAAATTGGATATCGGATCACTGGACATTGGAGATTATTTAGCAATTGGTGCAATTTTTGCTGCTACGGATTCTGTATGCACATTGCAGATTTTGAATCAGGATGAGACACCTTTACTCTACAGTCTTGTATTTGGAGAAGGTGTGGTAAATGATGCTACATCAGTGGTGCTATTTAATGCAATCCAGAGCTTTGATCTCTCCCATATTGATTCCTGGAATGCATTACAATTTATTGGCAGCTTCTTTTACTTATTTTTTACAAGCACTGTTCTGGGTGTGATGGTGAGTGTTATTATATCTTTCTATCTCGTGAGTGCAAACGTTTTCATTTTTTATGAATTCAGGCATTCTACAGATCGCGAGGTTGCTTTAATGATATTAATGGCATACCTTTCATATATGATGGCTGAATTGTTCTATTTAAGTGGCATTCTCACTGTGTTCTTTTGCGGGATCGTGATGTCACATTACACCTGGCACAATGTCACTGAAAGTTCCCGAGTTACCACAAAGCATGCTTTTGCTACGTTGTCATTTGTAGCTGAGATCTTTATCTTCCTTTACGTTGGCATGGACGCATTGGACATTGAAAAGTGGAGATTTGTCGGCGACAGTCCTGGGACTTCTTTGGCAGTAAGTTCCATACTTTTAGCTCTGGTTATGGCTGGCAGAGCTGCTTTTGTTTTTCCATTATCATTTTTGTCCAACTTAGCAAAAAAATCACCCGCTGAGAAAATTAGCTTCAGGCAGCAAGTGATAATATGGTGGGCTGGTCTCATGAGAGGTGCCGTCTCAATGGCTCTTGCTTATAATCAGTTCACAAGATCAGGACACACTCAATTGCGTGGGAATGCAATCATGATCACAAGCACTATAACAGTCGTTCTCTTCAGCACAGTGTTGTTTGGGTTAATGACCAAGCCTCTCATTAGGTTCTTGTTGCCTAATCCGAAACCCACATCAAGCATGGTTTTGTCCGATCCATCCACTCCCAAATCATTTATCATTCCGCTTCTCGGAGGCAGTCAAGACTCCGAAGTCGATACCAGGGCCCAAGAAATTCCCCGTCCGAGCAGTATTCGAGCCCTTCTAACCACTCCAACACACAATGTTCATCGGTACTGGCGTAAATTTGACGATGCATTTATGCGGCCGGTTTTTGGCGGACGGGGTTTTGTTCCCTATGTGCCTGGTTCGCCAACAGAGAGGAGTTCCAACCAATGGCAG 1587 41.78 SDHSSIVSMNLFVALLCGCIVIGHLLEENRWMNESITALLIGLSTGVVILLISGGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFSTIMLFGAIGTLISCCVISLGVIQFFKKLDIGSLDIGDYLAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHIDSWNALQFIGSFFYLFFTSTVLGVMVSVIISFYLVSANVFIFYEFRHSTDREVALMILMAYLSYMMAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVGDSPGTSLAVSSILLALVMAGRAAFVFPLSFLSNLAKKSPAEKISFRQQVIIWWAGLMRGAVSMALAYNQFTRSGHTQLRGNAIMITSTITVVLFSTVLFGLMTKPLIRFLLPNPKPTSSMVLSDPSTPKSFIIPLLGGSQDSEVDTRAQEIPRPSSIRALLTTPTHNVHRYWRKFDDAFMRPVFGGRGFVPYVPGSPTERSSNQWQ 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5067918 5072820 + Bma030189 Bma01g00565 75082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00565 529 PRINTS Na+/H+ exchanger signature 81 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma01g00565 529 PRINTS Na+/H+ exchanger signature 96 104 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma01g00565 529 PRINTS Na+/H+ exchanger signature 67 78 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma01g00565 529 PRINTS Na+/H+ exchanger signature 136 146 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma01g00565 529 Pfam Sodium/hydrogen exchanger family 11 430 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bma01g00565 529 PANTHER SODIUM/HYDROGEN EXCHANGER 2 1 528 - -
Bma01g00565 529 PANTHER SODIUM/HYDROGEN EXCHANGER 1 528 IPR018422 GO:0006812|GO:0015299|GO:0016021
Bma01g00565 529 Gene3D - 129 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00565 Bma-Chr1:5067918 Bma05g01064 Bma-Chr5:49333712 0 dispersed
Bma11g00963 Bma-Chr11:42949747 Bma01g00565 Bma-Chr1:5067918 1.50E-35 transposed
Bma14g00316 Bma-Chr14:3944965 Bma01g00565 Bma-Chr1:5067918 0 transposed
Bma01g00565 Bma-Chr1:5067918 Bma05g00316 Bma-Chr5:9974003 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00565 - - twl:120011273 875.544