Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00580 ATGGAGGCACTGGAGACCATACCACTTAAAGATTCTTCCTCGTTTCTCAGCACCAGCACCATTATTGCTCTCGCTGTGTTCTTCACTCTCCTCTGTGCCTGCATCGTTATTGGTCATCTCTTGGAAGAGAATAAGTGGGCAAATGAGTCGATAACCGCTCTTCTCTTGGGCTTGGTAGCAGGACTTGTGGTGTTGCTTATTAGTAAGTTTCGTAGTTCGAAAATTTTAGTGTTCAGCGAGGACTTGTTCTTCCTGTATTTGCTTCCACCAATCATTTTCAATGCTGGTTTCCAGGTAAAAAAGAAGCAGTTTTTCAAGAACTTTACTACAATCTTGTTGTTTGGAGCATTTGGAACGATTATTTCTTTCTGCGTCGTCTCCACTTGTGCCTATTTTATTTTAAAAAAAATTGGCGTGTCAGGTCTGACCGTTCAGGACTACTTAGCTGTTGGTGCAATCTTATCTGCAACTGATTCAGTTTGTACATTACAGGTTCTCAGTCAAGATGACACACCTTTTCTTTACAGTGTCGTGTTTGGAGAAGGAGTGGTGAATGATGCTACTTCAATTGTCATTTTCAATGCAGTGCAATCACTTAACTTAAGCAAAATCGATGCTATTACGGCTCTAAGATTGTTGGGGCAGTTTCTTTACCTGTACTTTACCAGCACTGCTCTTGGAGTAGTGGTGGGTCTTATAAGCGCTTTTATCATAAAAACACTTTATTTTGGAAGGCATTCCACTGATCGTGAAGTTGCATTGATGATGCTAATGGCTTATTTATCATATATGTTGGCTGAGCTTTTAAATCTGAGTGGAATTCTTACTATTTTCTTCTGCGGAATAGTCATGTCCCATTACACGTGGCACAATGTGACTGAAAGCTCACGAATAACAACCAAGCATGCATTTGCGACAATTTCATTTATTGCGGAGACTTTTATCTTCCTTTACGTGGGTATGGATGCCTTGGACATTGACAAATGGAGGGAAAGCCGGGCAAGTGCAGGAACTTCAATCGCCATTAGTGCCACTTTCTTTGCTCTAGTGCTAATCGGAAGAGCGACATTTGTGTTCCCTATCTCCAACATTGGCAATTATTTCCGGAAAAGAGACAGTTCGAAAATTGAGTTTAGACAACAGTTCATAATATGGTGGGCTGGCGTCATGAGAGGTGCTGTTACTGTTGCTTTGGTTTATAGCCAGTTTTCTTCCTCGGACGACTCAGAATCGCAGGCCAACGCCTTAATGATCACTTGTACAATCATTGTTGTTTTATTCAGCACAATTGTATTTGGGTCAGCAACAAAGCCTCTAATTGAAGCAGTGCTCTTAAGACATGCAAAACCACTGCTTTCAAATGCAACTGACATTCCAAGCCTTGAAGAATTACACATCCCGTTCTTCGACAACGGAGGTATCGATGGCAATCAAGACAACAGCGCAAGACCACCAAAGGTCTTCCTTGTTGCAAAGATACTATCTTGGCGAATCGTCATGGGCAACACCAAGGAACCATCACTGCTCTCGCCGATCAAGTTTACTCTACATGCAATGAAATCGAAAATCAAATAA 1575 41.59 MEALETIPLKDSSSFLSTSTIIALAVFFTLLCACIVIGHLLEENKWANESITALLLGLVAGLVVLLISKFRSSKILVFSEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTILLFGAFGTIISFCVVSTCAYFILKKIGVSGLTVQDYLAVGAILSATDSVCTLQVLSQDDTPFLYSVVFGEGVVNDATSIVIFNAVQSLNLSKIDAITALRLLGQFLYLYFTSTALGVVVGLISAFIIKTLYFGRHSTDREVALMMLMAYLSYMLAELLNLSGILTIFFCGIVMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVGMDALDIDKWRESRASAGTSIAISATFFALVLIGRATFVFPISNIGNYFRKRDSSKIEFRQQFIIWWAGVMRGAVTVALVYSQFSSSDDSESQANALMITCTIIVVLFSTIVFGSATKPLIEAVLLRHAKPLLSNATDIPSLEELHIPFFDNGGIDGNQDNSARPPKVFLVAKILSWRIVMGNTKEPSLLSPIKFTLHAMKSKIK 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5206617 5212718 - Bma000771.2 Bma01g00580 75097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00580 524 PRINTS Na+/H+ exchanger signature 96 110 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma01g00580 524 PRINTS Na+/H+ exchanger signature 111 119 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma01g00580 524 PRINTS Na+/H+ exchanger signature 151 161 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma01g00580 524 PRINTS Na+/H+ exchanger signature 82 93 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Bma01g00580 524 PANTHER SODIUM/HYDROGEN EXCHANGER 9 486 - -
Bma01g00580 524 Pfam Sodium/hydrogen exchanger family 27 441 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bma01g00580 524 Gene3D - 142 195 - -
Bma01g00580 524 PANTHER SODIUM/HYDROGEN EXCHANGER 9 486 IPR018422 GO:0006812|GO:0015299|GO:0016021
Bma01g00580 524 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 25 447 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00580 Bma-Chr1:5206617 Bma05g01064 Bma-Chr5:49333712 0 dispersed
Bma01g00580 Bma-Chr1:5206617 Bma05g00316 Bma-Chr5:9974003 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00580 K14724 - jre:108988829 710.679