Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00609 AGAATTTCTCCTTGTTTTCAGGTTGTTGGAGTTGATAACACATTTAGGAGGAAGTTCGACCGAGAGGAATATCTCGAACGTGCTCGGGAGCGTGAAAAACAGGTTTGGAAACTTTATACAAAAGGTCCACCTGTTCAGAGGAAACCTTTGAAGCACAGGGATTTTGAAGTAGACCTTCAATCTCGCTTGGGGAAAACTCAGGTTGTTACTCCAGTAGCTCCTTTAAGCCAGCAGGCTGGATACTATTGTTCAGTTTGTGAATGCGTTGTAAAGGATTCAGCAAACTACTTGGACCATATTAATGGAAAGAAACATCAAAGAGCATTGGGCATGTCTATGCGAGTAGAACGAGCATCTCTTCAGCAGGTGCAAGAGCGATTTGAAAATCTTAAGAAGAGGAAAACACCTGGCAGCTTTACGGAACAAGACCTTGATGAAAGAATATTAAAACAGCAGCAGGAAGAGGAGGAAAGGAAGCGACAGCGTAGAGAAAGGAGGAAAGAAAAGAAGAAGGAGAAGGCTGCAGAGGATGAAACTGAAGTAGATCCTGATGTTGCCGCCATGATGGGGTTTGGAGGTTTCGGTTCATCAAAAAAGTGA 600 43.33 RISPCFQVVGVDNTFRRKFDREEYLERAREREKQVWKLYTKGPPVQRKPLKHRDFEVDLQSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFENLKKRKTPGSFTEQDLDERILKQQQEEEERKRQRRERRKEKKKEKAAEDETEVDPDVAAMMGFGGFGSSKK 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5517308 5519899 + Bma000814.1 Bma01g00609 75126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00609 199 Pfam Zinc-finger of C2H2 type 81 105 - -
Bma01g00609 199 SUPERFAMILY beta-beta-alpha zinc fingers 76 118 IPR036236 -
Bma01g00609 199 MobiDBLite consensus disorder prediction 132 162 - -
Bma01g00609 199 Gene3D Classic Zinc Finger 75 113 - -
Bma01g00609 199 SMART ZnF_U1_5 78 112 IPR003604 GO:0003676|GO:0008270
Bma01g00609 199 MobiDBLite consensus disorder prediction 132 199 - -
Bma01g00609 199 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 10 199 IPR040107 GO:0000398|GO:0005681
Bma01g00609 199 Coils Coil 149 180 - -
Bma01g00609 199 Coils Coil 113 133 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00609 Bma05g00263 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00609 Bma-Chr1:5517308 Bma05g00263 Bma-Chr5:7304979 3.07E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56656 PF12171 zf-C2H2_jaz 1.80E-06 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00609 K12848 - jre:108987768 288.885