Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00611 ATGTCTTCTTCAAGACCGAGTCAATCATCAAGCAACTCAGGTCGATCAAGACACAGTGCTAGAATAATTGCTCAGACTACTGTAGATGCAAAACTTCATGCAAATTATGAAGAATCCAGTAGTTCTTTCGACTACTCAAGTTCAGTGCGGTTTACCAATGCTTTTGGTGAAGATCAACGACCCAAGTCTGACAAAGTCACAACAGCTTACCTCCATCACATACAAAAAGGCAAGCATATCCAGCCATTTGGCTGCTTGTTGGCTTTAGATGAGAAAACCTTCAAAGTCATTGCATACAGTGAAAATGCCACGGAAATGCTAACTATGGTGAGTCATGCAGTCCCAAGTGTTGGTGATCACCCAGTTCTTGGCTTTGGAATTGATTTTTGGTCCATTTTTACTCCCCCAAGCGCCTCAGCCTTGCAGAAGGTTCTTGGTTTCGGAGAGGTTACTCTTCTGAATCCTGTATTAGTTCATTGTAAGACATCTGGGAGGCCCTTCTATGCAATCGTTCATCGTGTTACCGGCAGCTTGATCATTGATTTTGAACCAGTGAAGCCTTATGAAATACCAATGACTGCAGCTGGGGCCCTACAATCTTACAGGCTTGCAGCAAAAGCAATTAACAGATTGCAGTCTCTGCCCAGTGGGAGCATGGAAAGACTTTGTCATACAATGGTTCAAGAGGTTTATGAACTCACAGGCTATGACAGAGTGATGGTCTACAAATTTCACGATGATGACCATGGGGAAGTGGTCTCCGAAGTCACAAAGCCCGGGTTGGAGCCATATCTGGGGTTACACTATCCAGCTACTGATATCCCTCAAGCTGCACGGTTTTTATTCATGAAGAATAAGGTCCGAATTATTGTTGATTGTCGTGCAAAACCTGTGAAAGTGCTCCAAGACGAGAAACTTTCGTTTGATCTAACTTTATGTGGTTCAACTTTAAGGGCCCCTCATAGTTGCCATTTGCAGTACATGGAGAACATGAATTCCATTGCTTCTCTGGCAATGGCTGTTGTGGTCAACGAGGAAGATGACGAGAATGACAATCCCAATTCCGTGCTGCCACAAAAGAGAAAGAGATTATGGGGTTTAGTAGTGTGCCATAACACAACCCCAAGGTTTGTACCATTCCCTCTAAGATATGCATGTGAATTTCTCGCCCAAGTATTTGGCATCCATGTCAACAAAGAATTAGAGCTGGAAAATCAGATTGTTGAAAAAAACATTCTACGCACACAAACACTCTTGTGCGACATGTTAATGCGGGACGCACCCTTAGGCATTGTAACACAGAGCCCGAATATAATGGATCTTGTGAAATGTGATGGAGCTGCCATGATATACAAAAATCAGGTATGGAGATTGGGAATAACTCCTAGTGAATTCCAGCTCCAAGAAATTGCAGCGTGGCTTTCTGAGCATCATATGGATTCGACTGGATTAAGCACAGATAGTTTGTACGATGCGGGTTTCCCAGGGGCTCTCGCTCTTGGTGATGGAGTGTGTGGAATGGCGACAGTTCGGATAACTTCCAAGGACATGATTTGTTGGTTCCGTACCCATGCTGTCGCGGAAATTCGATGGGGTGGGGCAAAGCATGAAGCTGGTGAAGAGGACGACGGTAGGAAAATGCATCCAAGATCATCTTTCAAAGCTTTTCTTGAAGTAGTTGAAAGGAGAAGTTTTCCCTGGAAGGACTATGAAATGGATGCAATCCATTCCCTGCAGCTTATATTGAGGAATGCACTGAAAGATATGCAAATGGTTGATACGAACAGCAAATCAATTCATGCAAAACTCAGCAACCTCAAGATTGGGGGGATGCAAGAACTAGAAGCAGTTACTGGAGAGATTGTCCGTTTGATTGAGACAGCCATGGTGCCTATTTTGGCTGTTGACGGAGAGGGGCTAGTTAATGGCTGGAATATGAAAATTGCTGAGTTAACTGGTCTTCCTGTTGAGAAAGCAATCGGAAAGCATTTTCTCTCTCTTGTGGAGGATTCTTCAGTAGATATAGTCAAGAAGATGTTGTACCTAGCGTTCCAAGGACAAGAGGAGAAAAACGTAGAATTTGAGATCAGAACTCACGGGCCTAGGATCGATGCAGGTCCCATTAGCTTAGTTGTGAACGCTTGTGCAAGCAGGGATTTGGAGGAAAATGTTGTTGGAGTGTGTTTTGTGGCTCAAGATATCACTGTTCAGAAGACAGTGATGGACAAGTTCACACGGATAGAAGGTGATTACAAAGCAATTGTGCAGAACCCAAATCCATTAATACCCCCTATATTTGGCATAGATGAATTTGGCTGGTGCACAGAATGGAACCCAGCAATGACAAAGTTAAGTGGGTGGAAGCGAGATGATGTTGTTGATAAAATACTCTTGGGAGAGGTCTTTGGGAACCAAATGGCCTGCTGTCGAGTCAAGAATCAAGAATTGTGCGTAAATCTTGGTGTAGTCCTTAATAATGCTATGAGTGGCCAAAATCCCGAAAAGATTTCTTTTGGTTTCTATGATCGGAAAGGAAAATACATAGAATGTCTGTTGTGTGTGAGTAAGAAAACAGACAGAGATGGTGTAGTGACTGGAATTTTTTGCTTTTTGCAACTTCCTAGCTTAGAGTTGCAGAAAGCACTCCATGTGCAGCACTTAGCCGAGAAAACTGCCATAAAGAGATCGAAAACATTAGGATATATAAAAAGGCAGATAGGAAGTTCTTTATCTGGCATCATATATTCTAGTGAAATGTTGGAGGGTACTGCATTGGAAGTAGAACAGAAACATCTTCTGCAAACAAGCACACAGTGCCAGCGGCAGCTCAGCAAGGTCCTTGATGACTCAGATCTTGATAGAATCTTTGATGGCTTTTTGGATCTTGAAATGGTTCAGTTTTCTCTACATGAAGTATTGGCGGCTTCGATCAGCCAAGTCATGATGAAGAGCAGAGAAAAGGGTGTTCTCGTACTAAATGAGACTGCTAAAGAGATCCAGAATGAAGCTCTATACGGTGATAATGCGAGGCTTCAGCAAGTGTTGGCTGATTTCTTACTAATATCAGTCAGCTTTTCTCCAGCAGGCGGCCAGATTATTATTTCGGCCAGTCTAACAAAAGATCAATTAGGCCAATCCATAGATCTAGCACATCTGAAGTTCAGAATAACCCAAGCAGGTGGAATACCAGCAGCGCTGCTAAATGAATTGTTTGAAAACAATGAAGACAGATCTGAAGAAGGGGTCAGCTTGCTTGTTAGCAGAAAGCTGATGAAGCTCATGAATGGAGATGTGCAATATCTGAGAGAAGAAGGCAAGTCTACATTCATCATATCTGTCGAGCTTGCGGCAGGCCACATGCCAATTTAG 3369 43.1 MSSSRPSQSSSNSGRSRHSARIIAQTTVDAKLHANYEESSSSFDYSSSVRFTNAFGEDQRPKSDKVTTAYLHHIQKGKHIQPFGCLLALDEKTFKVIAYSENATEMLTMVSHAVPSVGDHPVLGFGIDFWSIFTPPSASALQKVLGFGEVTLLNPVLVHCKTSGRPFYAIVHRVTGSLIIDFEPVKPYEIPMTAAGALQSYRLAAKAINRLQSLPSGSMERLCHTMVQEVYELTGYDRVMVYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRIIVDCRAKPVKVLQDEKLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLAMAVVVNEEDDENDNPNSVLPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFGIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAAMIYKNQVWRLGITPSEFQLQEIAAWLSEHHMDSTGLSTDSLYDAGFPGALALGDGVCGMATVRITSKDMICWFRTHAVAEIRWGGAKHEAGEEDDGRKMHPRSSFKAFLEVVERRSFPWKDYEMDAIHSLQLILRNALKDMQMVDTNSKSIHAKLSNLKIGGMQELEAVTGEIVRLIETAMVPILAVDGEGLVNGWNMKIAELTGLPVEKAIGKHFLSLVEDSSVDIVKKMLYLAFQGQEEKNVEFEIRTHGPRIDAGPISLVVNACASRDLEENVVGVCFVAQDITVQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGIDEFGWCTEWNPAMTKLSGWKRDDVVDKILLGEVFGNQMACCRVKNQELCVNLGVVLNNAMSGQNPEKISFGFYDRKGKYIECLLCVSKKTDRDGVVTGIFCFLQLPSLELQKALHVQHLAEKTAIKRSKTLGYIKRQIGSSLSGIIYSSEMLEGTALEVEQKHLLQTSTQCQRQLSKVLDDSDLDRIFDGFLDLEMVQFSLHEVLAASISQVMMKSREKGVLVLNETAKEIQNEALYGDNARLQQVLADFLLISVSFSPAGGQIIISASLTKDQLGQSIDLAHLKFRITQAGGIPAALLNELFENNEDRSEEGVSLLVSRKLMKLMNGDVQYLREEGKSTFIISVELAAGHMPI 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5522148 5526604 - Bma000816.1 Bma01g00611 75128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00611 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Bma01g00611 1122 SMART HKATPase_4 1006 1117 IPR003594 -
Bma01g00611 1122 Pfam Phytochrome region 414 588 IPR013515 GO:0006355|GO:0009584
Bma01g00611 1122 PANTHER PHYTOCHROME A 1 1118 - -
Bma01g00611 1122 Gene3D - 406 579 IPR043150 -
Bma01g00611 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Bma01g00611 1122 CDD PAS 761 872 IPR000014 -
Bma01g00611 1122 Pfam PAS fold 750 872 IPR013767 GO:0006355
Bma01g00611 1122 Pfam PAS fold 620 734 IPR013767 GO:0006355
Bma01g00611 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Bma01g00611 1122 SMART gaf_1 218 411 IPR003018 GO:0005515
Bma01g00611 1122 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Bma01g00611 1122 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Bma01g00611 1122 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Bma01g00611 1122 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Bma01g00611 1122 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Bma01g00611 1122 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Bma01g00611 1122 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Bma01g00611 1122 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Bma01g00611 1122 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Bma01g00611 1122 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Bma01g00611 1122 MobiDBLite consensus disorder prediction 1 22 - -
Bma01g00611 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Bma01g00611 1122 PIRSF Phytochrome_conventional 1 1120 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bma01g00611 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1118 - -
Bma01g00611 1122 Gene3D - 199 562 IPR029016 -
Bma01g00611 1122 SUPERFAMILY GAF domain-like 409 588 - -
Bma01g00611 1122 Gene3D - 957 1118 IPR036890 -
Bma01g00611 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1115 IPR003594 -
Bma01g00611 1122 CDD PAS 630 734 IPR000014 -
Bma01g00611 1122 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Bma01g00611 1122 Coils Coil 398 418 - -
Bma01g00611 1122 Gene3D PAS domain 74 321 - -
Bma01g00611 1122 Pfam GAF domain 218 401 IPR003018 GO:0005515
Bma01g00611 1122 SUPERFAMILY GAF domain-like 197 398 - -
Bma01g00611 1122 TIGRFAM sensory_box: PAS domain S-box protein 624 739 IPR000014 -
Bma01g00611 1122 SMART pas_2 749 818 IPR000014 -
Bma01g00611 1122 SMART pas_2 619 685 IPR000014 -
Bma01g00611 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1112 IPR036890 -
Bma01g00611 1122 Gene3D PAS domain 763 873 - -
Bma01g00611 1122 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Bma01g00611 1122 ProSiteProfiles Histidine kinase domain profile. 901 1117 IPR005467 -
Bma01g00611 1122 Pfam PAS fold 69 185 IPR013654 GO:0006355
Bma01g00611 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Bma01g00611 1122 Gene3D PAS domain 580 748 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00611 Bma-Chr1:5522148 Bma12g00850 Bma-Chr12:39312161 0 dispersed
Bma01g00611 Bma-Chr1:5522148 Bma05g00993 Bma-Chr5:48415383 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00611 K12120 - tcc:18600656 1791.16