Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00617 ATGGGTTGCGAGGGAGAGCTTCTGGTTCAAAACGTCTGCAAGTTGTACGAGCAACTCTCTAAGCTGTCAAGCCTCGAACCATCCAAAGAGGTGAACAAGCTCTTCACTGAGCTCGTCCTCGCCTGCATCCCACCAATCCCCATCGACGTAACCAAGCTCTGCGACAGGGTTCAGGAAATGAGGTCCAACCTCATTAAGCTATGTGGCGAAGCAGAGGGACATTTAGAGAGCCATTTCTCATCCATTTTAGGCTCCTTTTCAAACCCACTGGACCACCTCAATCTCTTCCCTTATTACTCAAATTATATCAAACTTGGCCTGCTTGAATTCAATATTCTCATGCAGCATTGCTCTCATTTTACGCCCAACAAAATTGCCTTCGTGGGTTCTGGCTCTCTCCCTCTTACCTCCATTGTTTTGGCCTCCAACCACCTTCCCAACGCCGTCTTTCACAATTACGACATCGATCCATTAGCCAACTCTAAGGCTTTCCGTTTAGTCTCCTCTCATCCTGATCTATCCAAGAGAGTGTTTTTCCACACCACTGACATACTCAAAGTGACAGATGACTTGAAACAGTACGATGTGGTGTTTTTAGCAGCTCTTGTTGGCATGGATAAGGAAGAAAAAGGTATAGTAATTGATCATTTGTCTAACTTCATGGCTGCTGGATCTTATCTTATGTTGAGGAGTGCTCATGGCGCTCGAGGTTTTCTCTACCCAGTGGTTGAGGCTTGTGAATTACGAGGGTTTGATGTTCTTTCTGTGTTTCATCCAACGGATGAGGTCATAAACTCTGTGGTGATTGCTCGTAAATTTTATCTGCCTTCGTCCGAGCTGCAAGAAAATCACCATGTTTTGCTGCCTAATAAGTGTTCTGAGATTCAGGTTTTTAATCCCCTTCACCGCGGGAATATGCTTGAAGATTTTGCAATTGAAGCCGACCAGCTTACCTGA 957 45.25 MGCEGELLVQNVCKLYEQLSKLSSLEPSKEVNKLFTELVLACIPPIPIDVTKLCDRVQEMRSNLIKLCGEAEGHLESHFSSILGSFSNPLDHLNLFPYYSNYIKLGLLEFNILMQHCSHFTPNKIAFVGSGSLPLTSIVLASNHLPNAVFHNYDIDPLANSKAFRLVSSHPDLSKRVFFHTTDILKVTDDLKQYDVVFLAALVGMDKEEKGIVIDHLSNFMAAGSYLMLRSAHGARGFLYPVVEACELRGFDVLSVFHPTDEVINSVVIARKFYLPSSELQENHHVLLPNKCSEIQVFNPLHRGNMLEDFAIEADQLT 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5587653 5588609 - Bma000822.1 Bma01g00617 75134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00617 318 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 89 237 IPR029063 -
Bma01g00617 318 PANTHER NICOTIANAMINE SYNTHASE 3 1 316 IPR004298 GO:0030410|GO:0030418
Bma01g00617 318 PANTHER SYNTHASE, PUTATIVE-RELATED 1 316 - -
Bma01g00617 318 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410|GO:0030418
Bma01g00617 318 Pfam Nicotianamine synthase protein 6 273 IPR004298 GO:0030410|GO:0030418
Bma01g00617 318 Gene3D Vaccinia Virus protein VP39 9 274 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00617 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - rcu:8269821 449.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00617 Bma-Chr1:5587653 Bma13g00601 Bma-Chr13:14215672 1.39E-144 dispersed
Bma01g00617 Bma-Chr1:5587653 Bma14g01297 Bma-Chr14:23618880 2.70E-146 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g00617 . 1 318 Nicotianamine Synthase Gene Family AT1G09240 60.6 9.0e-107 383.6
Bma14g01298 BCT 1 271 Nicotianamine Synthase Gene Family AT1G09240 65.3 2.4e-99 359.0
Bma14g01297 . 1 314 Nicotianamine Synthase Gene Family AT1G09240 58.8 9.0e-99 357.1
Bma13g00601 BCT 1 285 Nicotianamine Synthase Gene Family AT1G09240 61.2 8.4e-97 350.5
Bma07g00704 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 53.0 3.8e-73 271.9
Bma15g00862 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 54.1 1.4e-72 270.0
Bma01g00617 . 3 318 Nicotianamine Synthase Gene Family AT1G56430 58.4 1.2e-101 366.7
Bma14g01298 BCT 3 271 Nicotianamine Synthase Gene Family AT1G56430 64.7 7.0e-99 357.5
Bma14g01297 . 3 314 Nicotianamine Synthase Gene Family AT1G56430 57.2 1.7e-97 352.8
Bma13g00601 BCT 4 306 Nicotianamine Synthase Gene Family AT1G56430 55.3 1.8e-94 342.8
Bma07g00704 . 11 281 Nicotianamine Synthase Gene Family AT1G56430 52.0 4.1e-75 278.5
Bma15g00862 . 16 281 Nicotianamine Synthase Gene Family AT1G56430 53.0 5.0e-73 271.6
Bma01g00617 . 1 311 Nicotianamine Synthase Gene Family AT5G04950 57.9 1.3e-100 363.2
Bma14g01298 BCT 1 271 Nicotianamine Synthase Gene Family AT5G04950 62.2 4.5e-98 354.8
Bma14g01297 . 1 296 Nicotianamine Synthase Gene Family AT5G04950 56.0 1.0e-94 343.6
Bma13g00601 BCT 1 303 Nicotianamine Synthase Gene Family AT5G04950 55.6 3.9e-94 341.7
Bma14g01298 BCT 1 271 Nicotianamine Synthase Gene Family AT5G56080 61.7 7.1e-96 347.4
Bma01g00617 . 1 313 Nicotianamine Synthase Gene Family AT5G56080 56.1 1.2e-95 346.7
Bma14g01297 . 1 296 Nicotianamine Synthase Gene Family AT5G56080 56.2 7.4e-93 337.4
Bma13g00601 BCT 1 303 Nicotianamine Synthase Gene Family AT5G56080 55.6 1.6e-92 336.3
Bma07g00704 . 15 281 Nicotianamine Synthase Gene Family AT5G56080 50.4 7.9e-71 264.2
Bma15g00862 . 15 281 Nicotianamine Synthase Gene Family AT5G56080 50.7 3.0e-70 262.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00617 Bma_Chr01 FPKM 4.968472 5.477947 4.976731 5.080845 0.357391 0.754517 0.0 5.264409 4.974517 3.822672