Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00627 ATGAGCCAAATTGAAGTATCTATGACGAGGGCTCCTCTTGTTCCTCTCGCGACTCTAATAGGTCGGGAGCTTAGGAAAGAAAAGGCTGAGAAACCTTTTGTAAAGTTTGGACAGGCTGCTTTAGCAAAGAAAGGAGAGGATTACTTTCTCATAAAACCCGATTGCCAGCGGATTCCTGGGAACCCATCTTCATCATTTTCTGTCTTTGCGATTTTCGATGGGCACAATGGAATATCAGCCGCTATCTTTGCAAAGGAGCATTTATTGGGCAATGTCTTGAGTGCAATTCCTCAAGGGATCAGTCGAGACGAATGGCTTCAAGCCCTTCCTCGGGCTCTGGTTGCAGGTTTTGTAAAAACAGACATTGAGTTTCAGCATAAAGGTGAGACTTCAGGGACTACTGTCACATTTGTTGTGATTGATGGATGGACAGTTACTGTTGCATCTGTCGGAGATTCTCGGTGCATATTGGACAGTCAGGGAGGTGTGGTTTCTCTGCTGACTGTTGATCACAGGCTTGAGGAGAATGAGGAAGAGAGGGAGCGAGTCACTGCTAGTGGGGGCGAGGTAGGAAGGCTCAATGTTTTTGGAGGAAATGAGGTTGGGCCTCTTCGCTGTTGGCCAGGTGGACTATGTCTTTCTAGATCCATCGGTGATACAGATGTGGGAGAATTTATTGTTCCAATTCCCCATGTTAAGCAAGTGAAGCTTTCAACAGCTGGAGGACGACTGTTAATAGCTTCTGACGGTATCTGGGACGCATTATCGTCTGATATGGCTGCCAAATCTTGTCGCGGTTTACCCGCTGAGCTTGCTGCTAAGTTGGTCGTGAAGGAGGCTCTACGGTCGAGGGGCCTGAAGGACGATACCACATGTTTAGTTGTTGATATAATCCCTTCAGATCAACCTGTGCCTCCACCAACTCCAAGTAGGAAACAAAATGTGATAACTTCACTTATTTTTGGGAAGAAATCACAGAACTTTTCAAACAAAGCTGGGAACAATAAGCTTTCTGCTGTTGGAGTCGTGGAGGAATTATTTGAAGAGGGCTCTGCAGTGCTTGCTGAGAGGTTGGGCAAGGATTTTCCTTCGGACCCAAATTCTGGGATCGTCAAATGTGCAGTATGCCAAGTGAATCAACCCCCAAATGAAACTTTATCGGTGAATTCCGACGCTTTCTTCTCACCATCATTGAAGCCATGGGATGGCCCTATCCTCTGCCCAAACTGTCGAAAAAAGAAAGACGCAATGGAAGGGAAAAGACCAAGCAAAGCCACGATAACCTCTTAA 1290 46.28 MSQIEVSMTRAPLVPLATLIGRELRKEKAEKPFVKFGQAALAKKGEDYFLIKPDCQRIPGNPSSSFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGISRDEWLQALPRALVAGFVKTDIEFQHKGETSGTTVTFVVIDGWTVTVASVGDSRCILDSQGGVVSLLTVDHRLEENEEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSTAGGRLLIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDQPVPPPTPSRKQNVITSLIFGKKSQNFSNKAGNNKLSAVGVVEELFEEGSAVLAERLGKDFPSDPNSGIVKCAVCQVNQPPNETLSVNSDAFFSPSLKPWDGPILCPNCRKKKDAMEGKRPSKATITS 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5679783 5681970 + Bma000831.1 Bma01g00627 75144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00627 429 Pfam Protein phosphatase 2C 61 280 IPR001932 -
Bma01g00627 429 SMART PP2C_SIG_2 51 297 IPR001932 -
Bma01g00627 429 CDD PP2Cc 43 297 IPR001932 -
Bma01g00627 429 ProSiteProfiles PPM-type phosphatase domain profile. 25 297 IPR001932 -
Bma01g00627 429 Gene3D - 38 302 IPR036457 -
Bma01g00627 429 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 428 - -
Bma01g00627 429 PANTHER ALPHABET, ISOFORM E-RELATED 2 428 - -
Bma01g00627 429 SUPERFAMILY PP2C-like 43 297 IPR036457 -
Bma01g00627 429 SMART PP2C_4 23 295 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00627 Bma04g00170 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00627 Bma-Chr1:5679783 Bma01g02182 Bma-Chr1:78713791 3.70E-25 dispersed
Bma05g00267 Bma-Chr5:7551629 Bma01g00627 Bma-Chr1:5679783 2.07E-179 transposed
Bma13g00613 Bma-Chr13:14483023 Bma01g00627 Bma-Chr1:5679783 1.07E-69 transposed
Bma14g01907 Bma-Chr14:40766803 Bma01g00627 Bma-Chr1:5679783 0 transposed
Bma01g00627 Bma-Chr1:5679783 Bma04g00170 Bma-Chr4:1449456 7.85E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00627 - - tcc:18600536 728.783