Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00630 TCCCCCACCAAAATGGGTTATGGGAATGATTCCAGCAAGAAGAAGAGATACGCAATCGTGGGTGTTTCGGGTTTGTTACTCGTCGCCATGGTTGTCGCCGTCACGGTTGGAACCAACTTGAGCAGTAGCGACGAGAGCCATAATGCGAGCGAAAATTCTAATGAATTGTCTTCTTCAATGAAAGCCATTAAGTCGATTTGTCAACCCACGAGTTACAAAGAAGAATGCGTTGAGAGTCTCCAATCCTCAAACTCGAGCGATCCGAAAGAACTCATTCAGGTCGGTTTCAAGGCTGCGATGAAGTATGTCAATGAGGCTGCCAAGAAATCTACGACCTTGAAAGAGATCGAGAAAGACCCGAGGGCCGCCAAGGCGCTTGCCAATTGTAAAGAGCTTATGGACTTTGCCATTGGCGAGCTCAAGCACTCGTTTAACAAGCTAGGCGAATTCGATATTACAAAGCTTGATGAAATGCTCATAGACTTGAGAATTTGGCTTAGTGCTACCATCACATATCAGGAAACTTGCTTGGATGGGTTCGAAAACACCACAAGCAATGCCGGGGAGAAGATGAAATCGGCTTTGAAGACGTCGATGAGGCTAACCAGCAATGGTCTAGCCATGGTCACCGAGATGTCTTCCTTCCTCACCGACTTACAAATTCCAGGGATCAGCCGCAGGCTGCTTGCAGACGACATTCCTGTCCTCGGTCACGACGAGTTCCCCATCTGGGCCAACCCTGGCCTTAGAAGACTCCTCCAAGCTCCAGCTTCCAGCATCAAGGCTGACATCGTCATTGCCAAGGACGGAAGCGGAACATACAAGACCATCAACGAAGCATTAGTCCACATCCCAAAGTATAGCAATACTACCTTTGTGATTTACATCAAGGAGGGTGTTTATAATGAAGTTGTCCATTTCAATAAAACCTTCACGCATTTGCTATTGATCGGTGACGGCCCGACCAAAACCCGCATCAGCGGAAGCAGAAACTTCATCGACGGCACCCCGACCTTCAAGACTGCAACAGTTGGTATCTGTGCTTGGAGATTACTTCACTGCAAAGACATTGGATTTGAAAATACAGCTGGGCCCGAGAAACACCAGGCCGTGGCGTTGAGAGTTCAATCCGATTACGCCATCTTTTACAACTGCGCTATGGATGGTTACCAAGACACTCTCTACGTTCACGCGAAGCGACAATTCTACCGCGATTGTGAGGTCTCCGGTACGATCGATTTCGTATTCGGCGACGCTGCTGCTGTCTTCCAGAACTGCACGTTCTTAGTCCGCAAGCCATTGGAGAATCAGCAAACAATCGTCACAGCACAAGGAAGAAAGGACAGGAAACAGCCATCCGCGTTGATCCTCCAGAAGTGTAAGATCACCTCCGCTCCCGATTACCTCCCAGTGCGAAAGCAATTCCGAGCATTCCTCGGCCGCCCGTGGAAGGAGTACTCGAGGACGATCATCATGGAGTCGTTCATCGACGATTTGATTCAGCCGGAAGGATGGCTGCCATGGATGGGAGATTTCGGGCTCAGAACCTGCTTCTACACCGAATATAACAACTACGGCCCTGGCTCGGACAAATCACACCGAGTGAAGTGGCGGGGAATCAAGACGATTGATCCTGCACACGCAGAGAAATTCTCAGCCGGAGCGTTTTTCAAAATTGATAACTGGATCAAAGCCAGTGGAGTGCCTTACAACGCCGGATTGTTCACTGTAGTCAAAACAACTTGA 1746 49.08 SPTKMGYGNDSSKKKRYAIVGVSGLLLVAMVVAVTVGTNLSSSDESHNASENSNELSSSMKAIKSICQPTSYKEECVESLQSSNSSDPKELIQVGFKAAMKYVNEAAKKSTTLKEIEKDPRAAKALANCKELMDFAIGELKHSFNKLGEFDITKLDEMLIDLRIWLSATITYQETCLDGFENTTSNAGEKMKSALKTSMRLTSNGLAMVTEMSSFLTDLQIPGISRRLLADDIPVLGHDEFPIWANPGLRRLLQAPASSIKADIVIAKDGSGTYKTINEALVHIPKYSNTTFVIYIKEGVYNEVVHFNKTFTHLLLIGDGPTKTRISGSRNFIDGTPTFKTATVGICAWRLLHCKDIGFENTAGPEKHQAVALRVQSDYAIFYNCAMDGYQDTLYVHAKRQFYRDCEVSGTIDFVFGDAAAVFQNCTFLVRKPLENQQTIVTAQGRKDRKQPSALILQKCKITSAPDYLPVRKQFRAFLGRPWKEYSRTIIMESFIDDLIQPEGWLPWMGDFGLRTCFYTEYNNYGPGSDKSHRVKWRGIKTIDPAHAEKFSAGAFFKIDNWIKASGVPYNAGLFTVVKTT 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5694230 5696043 + Bma000834.1 Bma01g00630 75147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00630 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 213 IPR035513 -
Bma01g00630 581 CDD PMEI-like_3 65 214 - -
Bma01g00630 581 Pfam Plant invertase/pectin methylesterase inhibitor 62 208 IPR006501 GO:0004857
Bma01g00630 581 PANTHER PECTINESTERASE 19 575 - -
Bma01g00630 581 SUPERFAMILY Pectin lyase-like 260 573 IPR011050 -
Bma01g00630 581 Gene3D - 257 574 IPR012334 -
Bma01g00630 581 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Bma01g00630 581 PANTHER PECTINESTERASE 19 575 - -
Bma01g00630 581 SMART PMEI_2 58 208 IPR006501 GO:0004857
Bma01g00630 581 Pfam Pectinesterase 263 558 IPR000070 GO:0030599|GO:0042545
Bma01g00630 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 211 IPR006501 GO:0004857
Bma01g00630 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 213 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00630 Bma-Chr1:5694230 Bma13g00619 Bma-Chr13:14730685 0 dispersed
Bma01g00630 Bma-Chr1:5694230 Bma14g00847 Bma-Chr14:9437581 2.20E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00630 K01051 - csv:101207393 803.897