Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00656 ATGGACGGAGAGTGTTGCAGCTCCGCCGCTTCGAGCTCGGAGAAGAGGAAGCAGAAGGACAACCGGCAAGAGAAGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGAAAATGGGTTGCTGAAATTAGAGAACCGAATAAAAGGTCTAGGATTTGGCTAGGCTCTTACACAACTCCGATCGCCGCCGCTCGTGCGTATGACACCGCCGTGTTTTACCTCCGGGGACCGTCTGCTCGCCTGAACTTTCCCGAGTTGATCTTCCAAGAAGATCAGCTAAACGACATGTCCGCAGCTTCGATACGGAAAAAGGCCACCGAGGTAGGAGCGAGGGTGGACGCAATCGAAGCTTCTCTTAACGCCTCCAAGTGTAATTCTTCTCAGCTCTCGGAAAAACCTGATTTAAACGAGTTTCCAGACCCAGAAAACTCCGACGACGAAGACCATCTTCTGTGA 453 51.66 MDGECCSSAASSSEKRKQKDNRQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDQLNDMSAASIRKKATEVGARVDAIEASLNASKCNSSQLSEKPDLNEFPDPENSDDEDHLL 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5967683 5968135 + Bma000865.1 Bma01g00656 75173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00656 150 MobiDBLite consensus disorder prediction 13 27 - -
Bma01g00656 150 Pfam AP2 domain 27 75 IPR001471 GO:0003700|GO:0006355
Bma01g00656 150 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Bma01g00656 150 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Bma01g00656 150 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 144 - -
Bma01g00656 150 MobiDBLite consensus disorder prediction 122 150 - -
Bma01g00656 150 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Bma01g00656 150 MobiDBLite consensus disorder prediction 134 150 - -
Bma01g00656 150 MobiDBLite consensus disorder prediction 1 27 - -
Bma01g00656 150 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Bma01g00656 150 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Bma01g00656 150 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Bma01g00656 150 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Bma01g00656 150 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00656 Bma-Chr1:5967683 Bma06g00651 Bma-Chr6:34931400 4.29E-33 dispersed
Bma04g00319 Bma-Chr4:2550395 Bma01g00656 Bma-Chr1:5967683 1.49E-23 dispersed
Bma03g01111 Bma-Chr3:14395237 Bma01g00656 Bma-Chr1:5967683 4.78E-57 transposed
Bma09g00267 Bma-Chr9:14634594 Bma01g00656 Bma-Chr1:5967683 1.48E-51 transposed
Bma01g00656 Bma-Chr1:5967683 Bma01g02267 Bma-Chr1:79830359 1.14E-74 wgd
Bma01g00656 Bma-Chr1:5967683 Bma04g00157 Bma-Chr4:1351665 6.64E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56659 PF00847 AP2 8.80E-12 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00656 K09286 - csv:101219005 224.942