Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00657 GCAGGAATGAAGGTTCATCAATTTGCATGCGGATTCTGGGACCTCGACCTATGCTCCCACTCCCATGGCTGCAAGTGTCTCCGTCCTCTCGCTCCCAACCTTCAAAACAACACTGATACCGCCATCTCCACCTTTGATCTCAAGAACTACATCAGACCCGATTCCGGCCATAGATTAAATCCTTCCTTTGCCTTCTCTTCCGACGACAAGAGAGATTCACCTCAAGTGGAGGCGCATCCGGGAGGGACAAGGTGGAACCCAACTCAAGAGCAGATAGGGATATTGGAGATGCTTTACAGAGGAGGAATGAGAACTCCTAATGCACAAGAAATCGAACAAATCACAAAACAGCTTTGTAATTATGGGAAAATAGAAGGAAAAAATGTGTTTTATTGGTTTCAAAACCACAAAGCTCGAGCAAGGCAGAAACAGAAGCGAAACAGTCATGATGTTTGCCATAGCCCAAGAACATCGGTAGCTGACTCTAGGGTAGGACCTGTAATATTTTTCCATTTTTATGATGTTGAAGTTGCAGAAGAAATGGATTCTAATAGAATTTATGTTCAGATAGAAGGAATAGATCGTGAAAGAGAAGACAAGAGAAAGTGCAGAAGCTGGGTATTTGAATGCTTGGAGGAAGAGATCATCAATGTAAGTAATGGAGAAGATCCAGAAGACAGAACTTTGGAGTTGTTTCCATTGCACCCAGAAGGTAGGTGA 720 43.47 AGMKVHQFACGFWDLDLCSHSHGCKCLRPLAPNLQNNTDTAISTFDLKNYIRPDSGHRLNPSFAFSSDDKRDSPQVEAHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQEIEQITKQLCNYGKIEGKNVFYWFQNHKARARQKQKRNSHDVCHSPRTSVADSRVGPVIFFHFYDVEVAEEMDSNRIYVQIEGIDREREDKRKCRSWVFECLEEEIINVSNGEDPEDRTLELFPLHPEGR 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5979233 5980067 + Bma000866.1 Bma01g00657 75174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00657 239 PANTHER WUSCHEL-RELATED HOMEOBOX 4 3 239 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Bma01g00657 239 Pfam Homeodomain 83 142 IPR001356 GO:0003677
Bma01g00657 239 SMART HOX_1 80 147 IPR001356 GO:0003677
Bma01g00657 239 SUPERFAMILY Homeodomain-like 79 148 IPR009057 -
Bma01g00657 239 ProSiteProfiles 'Homeobox' domain profile. 78 143 IPR001356 GO:0003677
Bma01g00657 239 MobiDBLite consensus disorder prediction 62 86 - -
Bma01g00657 239 CDD homeodomain 83 144 IPR001356 GO:0003677
Bma01g00657 239 Gene3D - 84 151 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00657 Bma05g00042 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00657 Bma-Chr1:5979233 Bma06g00064 Bma-Chr6:1029892 3.95E-27 dispersed
Bma04g01433 Bma-Chr4:49360562 Bma01g00657 Bma-Chr1:5979233 4.07E-06 dispersed
Bma01g00657 Bma-Chr1:5979233 Bma05g00042 Bma-Chr5:2219801 4.13E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56660 PF00046 Homeodomain 1.40E-18 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00657 - - cit:102627740 269.626