Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00657 | GCAGGAATGAAGGTTCATCAATTTGCATGCGGATTCTGGGACCTCGACCTATGCTCCCACTCCCATGGCTGCAAGTGTCTCCGTCCTCTCGCTCCCAACCTTCAAAACAACACTGATACCGCCATCTCCACCTTTGATCTCAAGAACTACATCAGACCCGATTCCGGCCATAGATTAAATCCTTCCTTTGCCTTCTCTTCCGACGACAAGAGAGATTCACCTCAAGTGGAGGCGCATCCGGGAGGGACAAGGTGGAACCCAACTCAAGAGCAGATAGGGATATTGGAGATGCTTTACAGAGGAGGAATGAGAACTCCTAATGCACAAGAAATCGAACAAATCACAAAACAGCTTTGTAATTATGGGAAAATAGAAGGAAAAAATGTGTTTTATTGGTTTCAAAACCACAAAGCTCGAGCAAGGCAGAAACAGAAGCGAAACAGTCATGATGTTTGCCATAGCCCAAGAACATCGGTAGCTGACTCTAGGGTAGGACCTGTAATATTTTTCCATTTTTATGATGTTGAAGTTGCAGAAGAAATGGATTCTAATAGAATTTATGTTCAGATAGAAGGAATAGATCGTGAAAGAGAAGACAAGAGAAAGTGCAGAAGCTGGGTATTTGAATGCTTGGAGGAAGAGATCATCAATGTAAGTAATGGAGAAGATCCAGAAGACAGAACTTTGGAGTTGTTTCCATTGCACCCAGAAGGTAGGTGA | 720 | 43.47 | AGMKVHQFACGFWDLDLCSHSHGCKCLRPLAPNLQNNTDTAISTFDLKNYIRPDSGHRLNPSFAFSSDDKRDSPQVEAHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQEIEQITKQLCNYGKIEGKNVFYWFQNHKARARQKQKRNSHDVCHSPRTSVADSRVGPVIFFHFYDVEVAEEMDSNRIYVQIEGIDREREDKRKCRSWVFECLEEEIINVSNGEDPEDRTLELFPLHPEGR | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5979233 | 5980067 | + | Bma000866.1 | Bma01g00657 | 75174 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00657 | 239 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 3 | 239 | IPR044186 | GO:0003700|GO:0010067|GO:0010087|GO:0051301 | |
Bma01g00657 | 239 | Pfam | Homeodomain | 83 | 142 | IPR001356 | GO:0003677 | |
Bma01g00657 | 239 | SMART | HOX_1 | 80 | 147 | IPR001356 | GO:0003677 | |
Bma01g00657 | 239 | SUPERFAMILY | Homeodomain-like | 79 | 148 | IPR009057 | - | |
Bma01g00657 | 239 | ProSiteProfiles | 'Homeobox' domain profile. | 78 | 143 | IPR001356 | GO:0003677 | |
Bma01g00657 | 239 | MobiDBLite | consensus disorder prediction | 62 | 86 | - | - | |
Bma01g00657 | 239 | CDD | homeodomain | 83 | 144 | IPR001356 | GO:0003677 | |
Bma01g00657 | 239 | Gene3D | - | 84 | 151 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g00657 | Bma05g00042 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00657 | Bma-Chr1:5979233 | Bma06g00064 | Bma-Chr6:1029892 | 3.95E-27 | dispersed | |
Bma04g01433 | Bma-Chr4:49360562 | Bma01g00657 | Bma-Chr1:5979233 | 4.07E-06 | dispersed | |
Bma01g00657 | Bma-Chr1:5979233 | Bma05g00042 | Bma-Chr5:2219801 | 4.13E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56660 | PF00046 | Homeodomain | 1.40E-18 | CL0123 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00657 | - | - | cit:102627740 | 269.626 |