Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00658 | CAGATGGCGCAGATTCAGGTTCAACATCAGACTCCGATGGCCGGTGCAGGTGCTAATGGCGTGGCCGTAGCTGCCGGAGGGAGTCCAGGTGGATCTCCATTCGTCCCGACGTCGCTTTATGTTGGAGATCTTGACGTAAACGTCACTGACTCGCAGCTTTATGATCTGTTCAATCAAATGGGTCAGGTTCTGTCTGTTCGAGTCTGTAGGGACATGACCACCCGTCGATCTCTCGGTTATGGCTATGTCAACTATAACAATCCTCAAGATGCGGCCCGGGCATTGGAGGAATTAAATTTTACTCCATTAAATGGCGGGCCCATTAGAATTATGTATTCTCATCGTGACCCAAGTGTCCGCAAGAGTGGTGCTGCAAATATATTCATAAAGAATCTGGACAAGGCTATTGACCAGAAAGCATTGCACGACACATTTTCCTCCTTTGGAAGTATTCTTTCTTGCAAGATAGCTACTGATACTTCTGGCCTATCCAAAGGCTATGGTTTTGTTCAATTTGAAAATGAAGAGTTTGCCCAAAATGCAATTGACAAGTTAAATGGCATGCTGATTAATGACAAGCAGGTTTATGTTGGACACTTTCTTCGAAAACAGGAAAGAGAAAGTAGTTCAGATAAGGCAAAATTTAATAATGTTTACGTAAAGAATTTGTCAGAATCAACTACGGATGAAGATTTGAAGAATATTTTTGGTTCATATGGAGCTATCACCAGTGCTGTGGTGATGAAAGATGGAGATGGAAAGTCAAGATGTTTTGGTTTTGTCAATTTTGAAAGTGCAGATGATGCTGTCAAAGCAGTTGATGAACTGAATGGGAAGACGGTTGATGATAAGGAATGGTATGTTGGAAAAGCTCAGAAAAAATCAGAAAGAGAAGTTGAGCTTAAGGGTCGATATGAGCAAACTGTGAAGGAAACATATGATAAAAATCAAGGTGTAAACTTGTATGTCAAGAACTTGGATGATAGTATTGATGATGAAAAACTTAGAGAATTGTTCTCCGAGTTCGGTTCAATTACTTCATGCAAGGTTATGTGTGATCCAAATGGAGTCAGTAGAGGTTCTGGATTTGTTGCGTTCGCGACTCAAGAGGAAGCATCTCGTGCTCTTGCTGAGATGAATGGTAAAATGATTGTCAGTAAACCTCTCTATGTAGCTCTGGCACAACGAAAAGAAGAGAGAAGGGCGAGGTTGCAGGCACAATTTTCTCAAATGAGGCCTGTGGCAATGGCACCAGCAGTTGCTCCTCGTTTACCCATGTTCCATCCAGGTGCTGTGGGTCTTGGTCAACAGTTTTTATATGGACAAGCACCTCCTGCTTTAGTTCCTCAAGCAGGATTTGGTTACCAGCAGCAACTTGTTCCAGGAATGAGGCCTGGAGGAGTTCCTATGCCAAACTTCTTTGTTCCCATGGTCCATCAGAATCAGATTGGTCAACGGCCAGGAGGTCGGCAAGGATCAGGTCTGCAGCAAACTCAGCAACTTGTACCACTGATGCAGCCTCAGATGCTTCCAAGGGGACGAATATATCGTTATCCTCCTGGTCGTAACATGCCTGATGGACCGATGCCTGGTGTTGCTGGAGGTTTGCCTTCGTCTCCTTATGAGTTGGGTGGCATGCCTATGCGAGACCCATCTCTTGGACAATCTGCTCCTGTACCCGCTATGGCTACTGCCCTTGCCAATGCTACTCCAGAGCAGCAAAGGATGATGCTTGGGGAAGCCTTGTATCCCCTGGTGGATCAGTTGGAGCATGAATCAGCTGCTAAGGTAACTGGGATGCTCCTGGAGATGGACCAGACTGAGGTGTTGCACCTGCTTGAGTCGCCAGAGGCTTTGAGGGCAAAAGTTGCAGAGGCCATGGAGGTTCTTAGGAGTGTTGCCCAACAGCAGGGGAACGCTGCAGTCGATCAACTTTCCTCCCTCTCTCTTAACGATGATCTTGTAGGTTAA | 1971 | 45.51 | QMAQIQVQHQTPMAGAGANGVAVAAGGSPGGSPFVPTSLYVGDLDVNVTDSQLYDLFNQMGQVLSVRVCRDMTTRRSLGYGYVNYNNPQDAARALEELNFTPLNGGPIRIMYSHRDPSVRKSGAANIFIKNLDKAIDQKALHDTFSSFGSILSCKIATDTSGLSKGYGFVQFENEEFAQNAIDKLNGMLINDKQVYVGHFLRKQERESSSDKAKFNNVYVKNLSESTTDEDLKNIFGSYGAITSAVVMKDGDGKSRCFGFVNFESADDAVKAVDELNGKTVDDKEWYVGKAQKKSEREVELKGRYEQTVKETYDKNQGVNLYVKNLDDSIDDEKLRELFSEFGSITSCKVMCDPNGVSRGSGFVAFATQEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPAVAPRLPMFHPGAVGLGQQFLYGQAPPALVPQAGFGYQQQLVPGMRPGGVPMPNFFVPMVHQNQIGQRPGGRQGSGLQQTQQLVPLMQPQMLPRGRIYRYPPGRNMPDGPMPGVAGGLPSSPYELGGMPMRDPSLGQSAPVPAMATALANATPEQQRMMLGEALYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALRAKVAEAMEVLRSVAQQQGNAAVDQLSSLSLNDDLVG | 656 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5992093 | 5997124 | + | Bma000867.1 | Bma01g00658 | 75175 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00658 | 656 | CDD | RRM1_I_PABPs | 38 | 117 | - | - | |
Bma01g00658 | 656 | SUPERFAMILY | RNA-binding domain, RBD | 37 | 206 | IPR035979 | GO:0003676 | |
Bma01g00658 | 656 | Pfam | Poly-adenylate binding protein, unique domain | 566 | 630 | IPR002004 | GO:0003723 | |
Bma01g00658 | 656 | Gene3D | - | 33 | 116 | IPR012677 | - | |
Bma01g00658 | 656 | Gene3D | - | 304 | 409 | IPR012677 | - | |
Bma01g00658 | 656 | Gene3D | - | 206 | 303 | IPR012677 | - | |
Bma01g00658 | 656 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 558 | 635 | IPR002004 | GO:0003723 | |
Bma01g00658 | 656 | SMART | poly_2 | 570 | 633 | IPR002004 | GO:0003723 | |
Bma01g00658 | 656 | SUPERFAMILY | RNA-binding domain, RBD | 216 | 399 | IPR035979 | GO:0003676 | |
Bma01g00658 | 656 | Gene3D | - | 554 | 637 | - | - | |
Bma01g00658 | 656 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 37 | 115 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | Gene3D | - | 117 | 205 | IPR012677 | - | |
Bma01g00658 | 656 | SUPERFAMILY | PABC (PABP) domain | 502 | 645 | IPR036053 | GO:0003723 | |
Bma01g00658 | 656 | CDD | RRM3_I_PABPs | 215 | 294 | - | - | |
Bma01g00658 | 656 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 39 | 108 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 321 | 389 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 127 | 195 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 218 | 286 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 26 | 640 | - | - | |
Bma01g00658 | 656 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 125 | 202 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | CDD | RRM4_I_PABPs | 318 | 396 | - | - | |
Bma01g00658 | 656 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 38 | 631 | IPR006515 | GO:0003723 | |
Bma01g00658 | 656 | CDD | RRM2_I_PABPs | 123 | 199 | IPR045305 | - | |
Bma01g00658 | 656 | SMART | rrm2_1 | 126 | 198 | IPR003954 | GO:0003676 | |
Bma01g00658 | 656 | SMART | rrm2_1 | 217 | 289 | IPR003954 | GO:0003676 | |
Bma01g00658 | 656 | SMART | rrm2_1 | 38 | 111 | IPR003954 | GO:0003676 | |
Bma01g00658 | 656 | SMART | rrm2_1 | 320 | 392 | IPR003954 | GO:0003676 | |
Bma01g00658 | 656 | SMART | rrm1_1 | 217 | 289 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | SMART | rrm1_1 | 320 | 392 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | SMART | rrm1_1 | 38 | 111 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | SMART | rrm1_1 | 126 | 198 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 319 | 396 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 216 | 293 | IPR000504 | GO:0003723 | |
Bma01g00658 | 656 | PANTHER | RNA BINDING PROTEIN | 26 | 640 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00658 | Bma-Chr1:5992093 | Bma08g00805 | Bma-Chr8:45649075 | 0 | dispersed | |
Bma10g00907 | Bma-Chr10:17646899 | Bma01g00658 | Bma-Chr1:5992093 | 6.37E-06 | dispersed | |
Bma10g01133 | Bma-Chr10:37409216 | Bma01g00658 | Bma-Chr1:5992093 | 1.02E-20 | dispersed | |
Bma14g00878 | Bma-Chr14:9890046 | Bma01g00658 | Bma-Chr1:5992093 | 3.83E-07 | dispersed | |
Bma01g00658 | Bma-Chr1:5992093 | Bma03g00511 | Bma-Chr3:3976725 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00658 | K13126 | - | jre:108990379 | 999.964 |