Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00658 CAGATGGCGCAGATTCAGGTTCAACATCAGACTCCGATGGCCGGTGCAGGTGCTAATGGCGTGGCCGTAGCTGCCGGAGGGAGTCCAGGTGGATCTCCATTCGTCCCGACGTCGCTTTATGTTGGAGATCTTGACGTAAACGTCACTGACTCGCAGCTTTATGATCTGTTCAATCAAATGGGTCAGGTTCTGTCTGTTCGAGTCTGTAGGGACATGACCACCCGTCGATCTCTCGGTTATGGCTATGTCAACTATAACAATCCTCAAGATGCGGCCCGGGCATTGGAGGAATTAAATTTTACTCCATTAAATGGCGGGCCCATTAGAATTATGTATTCTCATCGTGACCCAAGTGTCCGCAAGAGTGGTGCTGCAAATATATTCATAAAGAATCTGGACAAGGCTATTGACCAGAAAGCATTGCACGACACATTTTCCTCCTTTGGAAGTATTCTTTCTTGCAAGATAGCTACTGATACTTCTGGCCTATCCAAAGGCTATGGTTTTGTTCAATTTGAAAATGAAGAGTTTGCCCAAAATGCAATTGACAAGTTAAATGGCATGCTGATTAATGACAAGCAGGTTTATGTTGGACACTTTCTTCGAAAACAGGAAAGAGAAAGTAGTTCAGATAAGGCAAAATTTAATAATGTTTACGTAAAGAATTTGTCAGAATCAACTACGGATGAAGATTTGAAGAATATTTTTGGTTCATATGGAGCTATCACCAGTGCTGTGGTGATGAAAGATGGAGATGGAAAGTCAAGATGTTTTGGTTTTGTCAATTTTGAAAGTGCAGATGATGCTGTCAAAGCAGTTGATGAACTGAATGGGAAGACGGTTGATGATAAGGAATGGTATGTTGGAAAAGCTCAGAAAAAATCAGAAAGAGAAGTTGAGCTTAAGGGTCGATATGAGCAAACTGTGAAGGAAACATATGATAAAAATCAAGGTGTAAACTTGTATGTCAAGAACTTGGATGATAGTATTGATGATGAAAAACTTAGAGAATTGTTCTCCGAGTTCGGTTCAATTACTTCATGCAAGGTTATGTGTGATCCAAATGGAGTCAGTAGAGGTTCTGGATTTGTTGCGTTCGCGACTCAAGAGGAAGCATCTCGTGCTCTTGCTGAGATGAATGGTAAAATGATTGTCAGTAAACCTCTCTATGTAGCTCTGGCACAACGAAAAGAAGAGAGAAGGGCGAGGTTGCAGGCACAATTTTCTCAAATGAGGCCTGTGGCAATGGCACCAGCAGTTGCTCCTCGTTTACCCATGTTCCATCCAGGTGCTGTGGGTCTTGGTCAACAGTTTTTATATGGACAAGCACCTCCTGCTTTAGTTCCTCAAGCAGGATTTGGTTACCAGCAGCAACTTGTTCCAGGAATGAGGCCTGGAGGAGTTCCTATGCCAAACTTCTTTGTTCCCATGGTCCATCAGAATCAGATTGGTCAACGGCCAGGAGGTCGGCAAGGATCAGGTCTGCAGCAAACTCAGCAACTTGTACCACTGATGCAGCCTCAGATGCTTCCAAGGGGACGAATATATCGTTATCCTCCTGGTCGTAACATGCCTGATGGACCGATGCCTGGTGTTGCTGGAGGTTTGCCTTCGTCTCCTTATGAGTTGGGTGGCATGCCTATGCGAGACCCATCTCTTGGACAATCTGCTCCTGTACCCGCTATGGCTACTGCCCTTGCCAATGCTACTCCAGAGCAGCAAAGGATGATGCTTGGGGAAGCCTTGTATCCCCTGGTGGATCAGTTGGAGCATGAATCAGCTGCTAAGGTAACTGGGATGCTCCTGGAGATGGACCAGACTGAGGTGTTGCACCTGCTTGAGTCGCCAGAGGCTTTGAGGGCAAAAGTTGCAGAGGCCATGGAGGTTCTTAGGAGTGTTGCCCAACAGCAGGGGAACGCTGCAGTCGATCAACTTTCCTCCCTCTCTCTTAACGATGATCTTGTAGGTTAA 1971 45.51 QMAQIQVQHQTPMAGAGANGVAVAAGGSPGGSPFVPTSLYVGDLDVNVTDSQLYDLFNQMGQVLSVRVCRDMTTRRSLGYGYVNYNNPQDAARALEELNFTPLNGGPIRIMYSHRDPSVRKSGAANIFIKNLDKAIDQKALHDTFSSFGSILSCKIATDTSGLSKGYGFVQFENEEFAQNAIDKLNGMLINDKQVYVGHFLRKQERESSSDKAKFNNVYVKNLSESTTDEDLKNIFGSYGAITSAVVMKDGDGKSRCFGFVNFESADDAVKAVDELNGKTVDDKEWYVGKAQKKSEREVELKGRYEQTVKETYDKNQGVNLYVKNLDDSIDDEKLRELFSEFGSITSCKVMCDPNGVSRGSGFVAFATQEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPAVAPRLPMFHPGAVGLGQQFLYGQAPPALVPQAGFGYQQQLVPGMRPGGVPMPNFFVPMVHQNQIGQRPGGRQGSGLQQTQQLVPLMQPQMLPRGRIYRYPPGRNMPDGPMPGVAGGLPSSPYELGGMPMRDPSLGQSAPVPAMATALANATPEQQRMMLGEALYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALRAKVAEAMEVLRSVAQQQGNAAVDQLSSLSLNDDLVG 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5992093 5997124 + Bma000867.1 Bma01g00658 75175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00658 656 CDD RRM1_I_PABPs 38 117 - -
Bma01g00658 656 SUPERFAMILY RNA-binding domain, RBD 37 206 IPR035979 GO:0003676
Bma01g00658 656 Pfam Poly-adenylate binding protein, unique domain 566 630 IPR002004 GO:0003723
Bma01g00658 656 Gene3D - 33 116 IPR012677 -
Bma01g00658 656 Gene3D - 304 409 IPR012677 -
Bma01g00658 656 Gene3D - 206 303 IPR012677 -
Bma01g00658 656 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 558 635 IPR002004 GO:0003723
Bma01g00658 656 SMART poly_2 570 633 IPR002004 GO:0003723
Bma01g00658 656 SUPERFAMILY RNA-binding domain, RBD 216 399 IPR035979 GO:0003676
Bma01g00658 656 Gene3D - 554 637 - -
Bma01g00658 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Bma01g00658 656 Gene3D - 117 205 IPR012677 -
Bma01g00658 656 SUPERFAMILY PABC (PABP) domain 502 645 IPR036053 GO:0003723
Bma01g00658 656 CDD RRM3_I_PABPs 215 294 - -
Bma01g00658 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Bma01g00658 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 389 IPR000504 GO:0003723
Bma01g00658 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 195 IPR000504 GO:0003723
Bma01g00658 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 286 IPR000504 GO:0003723
Bma01g00658 656 PANTHER POLYADENYLATE-BINDING PROTEIN 26 640 - -
Bma01g00658 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 202 IPR000504 GO:0003723
Bma01g00658 656 CDD RRM4_I_PABPs 318 396 - -
Bma01g00658 656 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 38 631 IPR006515 GO:0003723
Bma01g00658 656 CDD RRM2_I_PABPs 123 199 IPR045305 -
Bma01g00658 656 SMART rrm2_1 126 198 IPR003954 GO:0003676
Bma01g00658 656 SMART rrm2_1 217 289 IPR003954 GO:0003676
Bma01g00658 656 SMART rrm2_1 38 111 IPR003954 GO:0003676
Bma01g00658 656 SMART rrm2_1 320 392 IPR003954 GO:0003676
Bma01g00658 656 SMART rrm1_1 217 289 IPR000504 GO:0003723
Bma01g00658 656 SMART rrm1_1 320 392 IPR000504 GO:0003723
Bma01g00658 656 SMART rrm1_1 38 111 IPR000504 GO:0003723
Bma01g00658 656 SMART rrm1_1 126 198 IPR000504 GO:0003723
Bma01g00658 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Bma01g00658 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 293 IPR000504 GO:0003723
Bma01g00658 656 PANTHER RNA BINDING PROTEIN 26 640 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00658 Bma-Chr1:5992093 Bma08g00805 Bma-Chr8:45649075 0 dispersed
Bma10g00907 Bma-Chr10:17646899 Bma01g00658 Bma-Chr1:5992093 6.37E-06 dispersed
Bma10g01133 Bma-Chr10:37409216 Bma01g00658 Bma-Chr1:5992093 1.02E-20 dispersed
Bma14g00878 Bma-Chr14:9890046 Bma01g00658 Bma-Chr1:5992093 3.83E-07 dispersed
Bma01g00658 Bma-Chr1:5992093 Bma03g00511 Bma-Chr3:3976725 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00658 K13126 - jre:108990379 999.964