Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00659 ATGCAAGGGCAAAGTGGTAGTGTTGGCTCCTTGCCAGAAACATTGAATTTTGACCATGGCTCTTCATCGGGTAATACTGCTGTAGATCAGCAAATTTACTGGAATAATAGGCGGAATCCTTCAGAAAACCAAATATCTGACTACTTATTGTTGCAGCAAAGTGATGTAAACTTATCATATGCTAACGCAGTGGGCAGGGAGCAAGAGAGCTTGGCCAGATGGTCCATAGGTGAACCTAGCTCTAGTGGTGCAGCCATTGAAATGGGTTGTGATGAGCGGAAAGCAGAGCTTGGATGGACCTCAGCAGGATCTCATCCTTCTCAAGCACCTAACAGGCTTCTTCCTGACAATTATTCTCCAAATTTAAGGTCAGCACCAGCCACCGATAATGCAACTACTCAAAACCCACCATTTGTTCTTCGTGTTCCTGCTTTGCCTCGAAGTGTGCTAACTTCCAGGGTGAGTGGGGGGAGGGAGAGTTTGCATTCAAGAACTGGTGGTTCATTCGGCTTGGTTGGTGATAGACTTGATCTGCAACGTGAGGATGCCACCTCAAGTAGCACAGCAAGAATTATATTGGAAAATTCTCTGTTTGTACCAGCAACTGAATCAAGAAATCCAACTCGGAATCCGCCAAATCGACGAAGACATGGTGGAAACTTGATTATTCCTGGCAATGTTCCATCTATGTCTAGGACCAGATCCAATATGGCAACTCATCCACAATCTGGCTCTTGGCTTCCTCATGAGAATTCTCTTCCTCCACAATATCCAACGCGATTGTCGGACTATGTTCGTCGACAATTGTTTTCTTCAACTTTGGAGTCTGGTGGGGGCCAGCCAAATAATCTTCCATCATTAAATTCAGGTCCCTTCTCTCAAGATATGCTTCTCTCTGGAGCTGGTAACCAGGGACATCATTCATCACTCCCCAGAGCCATGCCATGGATCGAGAGACAAGGTGAAGGGGCACTTGGTATTCCATATTCCTTGCGATCAATAGCTGCTCCTGCTGAAGGTAGTGGAGGCCATAGACTCGTATCAGAGCAGATTCGCAACGTCTTAGGTCTCATGCGTCGAGGCGAGAACTTACGAATTGAGGATGTTATGATCCTTGATCAGTCTGTATTATTTGGGGTGGCTGACTTTCACGATCGTCACCGAGACATGCGCCTCGATGTAGATAACATGTCATATGAGTATTTACAGGAGTTATTGGCTCTAGAAGAGCGAATTGGAAATGTAAGCACTGGGCTTTCCGAAGACACAATTCTAACTCGCCTTAAACAGAGCAAATGTGCTCCTGTCTTAGGATCTCCGATGGAGGAAGAACCTTGCTGTATTTGTCAATTAATTATCATATACCCCGAAATGCAGGAGGAATATGTCGAGGGAGAGGACGTCGGGAAGTTAGATTGTGGGCATGATTATCACACCGGCTGTATCAAGCAGTGGCTGATGATCAAGAATTTGTGTCCAATTTGTAAAACAACTGCACTGCCAACGTAA 1509 45.53 MQGQSGSVGSLPETLNFDHGSSSGNTAVDQQIYWNNRRNPSENQISDYLLLQQSDVNLSYANAVGREQESLARWSIGEPSSSGAAIEMGCDERKAELGWTSAGSHPSQAPNRLLPDNYSPNLRSAPATDNATTQNPPFVLRVPALPRSVLTSRVSGGRESLHSRTGGSFGLVGDRLDLQREDATSSSTARIILENSLFVPATESRNPTRNPPNRRRHGGNLIIPGNVPSMSRTRSNMATHPQSGSWLPHENSLPPQYPTRLSDYVRRQLFSSTLESGGGQPNNLPSLNSGPFSQDMLLSGAGNQGHHSSLPRAMPWIERQGEGALGIPYSLRSIAAPAEGSGGHRLVSEQIRNVLGLMRRGENLRIEDVMILDQSVLFGVADFHDRHRDMRLDVDNMSYEYLQELLALEERIGNVSTGLSEDTILTRLKQSKCAPVLGSPMEEEPCCICQLIIIYPEMQEEYVEGEDVGKLDCGHDYHTGCIKQWLMIKNLCPICKTTALPT 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6000514 6003965 + Bma000868.2 Bma01g00659 75176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00659 502 SUPERFAMILY RING/U-box 441 499 - -
Bma01g00659 502 MobiDBLite consensus disorder prediction 273 306 - -
Bma01g00659 502 MobiDBLite consensus disorder prediction 101 137 - -
Bma01g00659 502 CDD RING-H2_TTC3 445 496 - -
Bma01g00659 502 ProSiteProfiles Zinc finger RING-type profile. 446 496 IPR001841 -
Bma01g00659 502 SMART ring_2 446 495 IPR001841 -
Bma01g00659 502 Pfam RING-H2 zinc finger domain 445 496 IPR024766 GO:0008270
Bma01g00659 502 MobiDBLite consensus disorder prediction 226 254 - -
Bma01g00659 502 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 106 - -
Bma01g00659 502 MobiDBLite consensus disorder prediction 1 24 - -
Bma01g00659 502 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 107 500 IPR045191 GO:0061630
Bma01g00659 502 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 107 500 - -
Bma01g00659 502 MobiDBLite consensus disorder prediction 100 137 - -
Bma01g00659 502 MobiDBLite consensus disorder prediction 273 310 - -
Bma01g00659 502 MobiDBLite consensus disorder prediction 202 254 - -
Bma01g00659 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 500 IPR013083 -
Bma01g00659 502 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 106 IPR045191 GO:0061630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00659 - - - csv:101203243 417.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00659 Bma-Chr1:6000514 Bma12g00439 Bma-Chr12:11073626 4.58E-64 dispersed
Bma01g00659 Bma-Chr1:6000514 Bma01g01312 Bma-Chr1:17911667 8.73E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00659 Bma_Chr01 FPKM 3.838889 3.541279 6.965844 7.741806 2.673776 2.142269 2.791428 8.589942 8.79935 9.509123