Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00660 ATGCGTATCATCAATGAACCAACTGCTGCAGCCATTGCGTATGGACTTGATAAGAAGGCTGGAAGTACTGGAGAGAAAAATGTTCTGATTTTTGACCTTGGTGGTGGTACCTTTGATGTTTCCCTTCTTACCATTGAAGAGGGTATTTTTGAGGTGAAAGTTACAGCAGGAGATACTCACTTAGAAGGTGAAGACTTTGACAACAGGATGGTGAACTATTTTGTCCATGAGTTCAAGAGGAAGAACAAGAAGGATATTAGTGGGAATCTCAGGTCCTTGAGGCGGTTGAGACCTGCTCGTGAGGGAGCTAACAGGACTCTCTCTTCGACAGCTCAGACAACGATAGAGATTGATTCAATGTCGCAGTTTGTTCAAGATTTTATTACAAAAGTTATACAGGACATTGATGGGGTTTTAAATCCAAGAACACCTGGGAAAATTTCGCTAGGTGTGCATGTTGGTGCATTTGAGACTACTACTATTAGTATGTTTAAAACAACATTGGAAGGGAGGAAAGGGGAGTTGGCAGATGGGAAGGGCGAAAGGGATGATGATTTGGAAATTCAAATTGGTAATAAGCTGCGCAGGGATGCATTTCTGGTGTTCCGAACGCTTTGTAAGTTGTCTATGAAGACACCACCGAAGGAGGCAATGGGGGATCCTCAGTTGATGAAGGGGAAGATTGTCGCATTGGAATTCTTGAAGATTTTGTTGGAAAATGTTGGTGAGAGTGATAACGTAGTGAAAAGGATCTTCGGTGGTCGTCTTATAAGCAAACTTCGTTGTTGCAATTGCGGGCATTTATCTGACAAGAGGGAAATTGATGAATTATGTGATGAATGGACACCAGAATCCCTTATTCCACCCCTCACAGAAGAGGTACGTGAGCCACCAGTGTTGGAAAGTTCTGCTGGGCCACATGCTATTGTCAATGGAAAAGAAGTAGTGAACTTTGCCTCTGCAAACTATCTTGGACTGATAGGCGATAAGAAGTTACTTGAGTCATGTACCTCAGCTTTGGAGAAGTATGGTGTTGGTTCTTGTGGTCCTCGCGGGTTCTACGGAACTATCGACGTCCACCTTGACTGTGAGGCCAGAATAGCAAAGTTTTTGGGAACTCCAGAATCTATCCTGTATTCTTATGGGCTTTCCACTATGTTCAGTGCAATTCCAGCTTTTTGTAAGAAAGGAGATGTCGTCGTTGCGGATGAGGGTGTTCACTGGGGAATACAAAATGGCCTTTATCTTTCACGAAGCACCATTTTATATTTCAAACACAATGATATGGAGTCTTTAAGAACAACTCTAGAGAAAATAACAATTGGAAACAAACGGGCCAAGAAAGTGCGACGATATATTGTCATTGAAGCTGTCTATCAGGCAAGCTTCCACTCGCGTAACTCTGGCCAAATCACACCCTTGGATGAGATCATTCGATTGAAGGAGAAATATCGGTTTCGTGTTCTGTTGGATGAAAGCAACTCAATCGGGGTGCTGGGGAATTCCGGTAGAGGTCTCACTGAGTTCTGTGGAGTTCCAGTTGATAAGGTAGATATTATAACAGCTGCCATGGGACATGCCTTGGCTACTGAAGGGGGATTCTGCACTGGAAGCACTCGTGTCATCGACCACCAGCGGTTGAGCAGTTCTGGATATACCTTCTCTGCTTCTTTGCCTCCATATCTAGCTACTGCAGCAATCACTGCCATTGATGTCCTCGAGGAAAATCCAGAACTCATAACAAAGCTTAGGAAAAATATTGCCATTATGTGGAAAGAATTATCGGATGTGCGTGGCCTCAGATTAGCAAGCCACCCGGAATCACCTATTATTTTTCTTAGGCTAGAGAATTCCACTGGGTCAATGAGAACTGACCTTCATATCCTAGAAAATATAGCCGATATTGTAAGAAACTACTCCCTGCGATGTGATAATCTTTCATGCTTGTCTTTCCTTGCTAAAGGGTGTGCCCATTTTCAGGCGTTGAAAGAGGATTCTGTATTTTTAGTGACCTCAAAAAGATCAACACTTGACAAGTGCAAACTTTCGGTTGGCATCAGACTGTTCGTCTCAGCTGCCCATTTGGAAGCTGATCTGCTCAAGGCATCTAAATCACTGAAAAGAGTTGCATCCATGGTGCTTAAGAAGTCAATTTGA 2157 43.25 MRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKVTAGDTHLEGEDFDNRMVNYFVHEFKRKNKKDISGNLRSLRRLRPAREGANRTLSSTAQTTIEIDSMSQFVQDFITKVIQDIDGVLNPRTPGKISLGVHVGAFETTTISMFKTTLEGRKGELADGKGERDDDLEIQIGNKLRRDAFLVFRTLCKLSMKTPPKEAMGDPQLMKGKIVALEFLKILLENVGESDNVVKRIFGGRLISKLRCCNCGHLSDKREIDELCDEWTPESLIPPLTEEVREPPVLESSAGPHAIVNGKEVVNFASANYLGLIGDKKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPAFCKKGDVVVADEGVHWGIQNGLYLSRSTILYFKHNDMESLRTTLEKITIGNKRAKKVRRYIVIEAVYQASFHSRNSGQITPLDEIIRLKEKYRFRVLLDESNSIGVLGNSGRGLTEFCGVPVDKVDIITAAMGHALATEGGFCTGSTRVIDHQRLSSSGYTFSASLPPYLATAAITAIDVLEENPELITKLRKNIAIMWKELSDVRGLRLASHPESPIIFLRLENSTGSMRTDLHILENIADIVRNYSLRCDNLSCLSFLAKGCAHFQALKEDSVFLVTSKRSTLDKCKLSVGIRLFVSAAHLEADLLKASKSLKRVASMVLKKSI 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6017630 6025103 - Bma000869.2 Bma01g00660 75177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00660 718 Gene3D - 329 576 IPR015421 GO:0003824
Bma01g00660 718 Gene3D Aspartate Aminotransferase, domain 1 308 622 IPR015422 GO:0003824
Bma01g00660 718 Gene3D - 19 61 - -
Bma01g00660 718 ProSitePatterns Heat shock hsp70 proteins family signature 2. 30 43 IPR018181 -
Bma01g00660 718 PANTHER LONG CHAIN BASE BIOSYNTHESIS PROTEIN 1-LIKE 660 715 - -
Bma01g00660 718 PANTHER LONG CHAIN BASE BIOSYNTHESIS PROTEIN 1-LIKE 270 636 - -
Bma01g00660 718 Gene3D - 1 18 - -
Bma01g00660 718 PANTHER CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE 660 715 - -
Bma01g00660 718 PANTHER CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE 270 636 - -
Bma01g00660 718 SUPERFAMILY Actin-like ATPase domain 23 138 IPR043129 -
Bma01g00660 718 SUPERFAMILY PLP-dependent transferases 290 709 IPR015424 -
Bma01g00660 718 Pfam Aminotransferase class I and II 314 615 IPR004839 GO:0009058|GO:0030170
Bma01g00660 718 Pfam Hsp70 protein 1 125 IPR013126 GO:0005524|GO:0140662
Bma01g00660 718 Gene3D Actin; Chain A, domain 4 62 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00660 Bma-Chr1:6017630 Bma08g00994 Bma-Chr8:49032753 4.13E-59 dispersed
Bma08g00275 Bma-Chr8:3764609 Bma01g00660 Bma-Chr1:6017630 4.70E-09 dispersed
Bma08g00372 Bma-Chr8:8179256 Bma01g00660 Bma-Chr1:6017630 7.82E-12 dispersed
Bma12g01093 Bma-Chr12:43214675 Bma01g00660 Bma-Chr1:6017630 5.79E-11 dispersed
Bma01g00660 Bma-Chr1:6017630 Bma04g00660 Bma-Chr4:6354896 3.69E-60 transposed
Bma01g00660 Bma-Chr1:6017630 Bma01g01879 Bma-Chr1:69104163 3.19E-60 transposed
Bma01g00660 Bma-Chr1:6017630 Bma10g00293 Bma-Chr10:2671676 4.87E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00660 K00654 - zju:107420013 686.411