Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00666 TCTTCTTCGGAGAAGATGGCGGAAAGACATAATGGGTTTTCTCAGCAGCACTGTTCTGCATTTCTTCTGGACGCTCTGTATTGCTCGGAAGAGAAATTGGAAGGCGGAGATGGAGGTAAAGAAGAAGAAAAAAACATGGTCGATTTTGGGTATAAGATTCAGACCCCTCTTACTCTTTTAGAGCAAGATTGTTTATGGGCCGATGATGAGCTCGTCTCTTTACTCTCGAAGGAGCTGCCCAATGAACTCCACAACTCCTTGCTGAGCAACCCACCTCTGGCTGCGGCTCGGAGAGAGGCTGTGGAGTGGATGCTGAAGGTCAATACCCGGTTCTCCTTTTCAGCACTCACTGCAGTTCTCGCCGTTGATTATTTCGACAGATTTATGTCCAAATTCTACCAGCAGAGGGAGAGGCCATGGATGGCCCAGCTTGTTGCTGTGGCTTGTATCTCCCTGGCTGCGAAGGTAGAAGAGACTGAAGTTCCTCTTCTACTAGACCTGCAAGTGGAGGTGAGCAGGTTTGTGTTCGAAGCCAAAACAATTAAGAGAATGGAGATTCTCGTGCTCTCCACGCTTGAATGGCGGATGAATCCTGTAACCCCACTTTCTTTTTTGGATTATTTTACGAGAAGGCTTGGGTTGAAAGACTATCTTTTTTGCGAATTTCTCAGAAGATGCGACCGAACTCTTATCTCCGCCATTGTAGATTCAAGGCTTACGTCTTATCTTCCATCTGTTATAGCCACTGCTACTATGCTTTCCGTTGTCAATTGTATAGAACCATGTCTTGAGCTGCAATTTCAAAACCAGCTTCTGGGTATTGTTGGAGTCGATAAGGACAAGGTAGATAGTTGTCATACTCTTCTTACGGAAGCATTTGAGGGAGACGGAGAAAAGTCAAACAAACGCAAATTCCGATCATCTCCCGGAAGTCCCAACGGAGTAATGGACTTATCTCTCAGCTCCGATTGGTCAAGCAACTCATGGTCTCTACCATCCTCTGTTTCGTCCTCACCAGAGCCTTTGTCCAAGAAACTCAGGCCCCAGGACCCAACCCCAGCTGCGGACTTTCTCAGCATTCCTCGCTAG 1089 47.02 SSSEKMAERHNGFSQQHCSAFLLDALYCSEEKLEGGDGGKEEEKNMVDFGYKIQTPLTLLEQDCLWADDELVSLLSKELPNELHNSLLSNPPLAAARREAVEWMLKVNTRFSFSALTAVLAVDYFDRFMSKFYQQRERPWMAQLVAVACISLAAKVEETEVPLLLDLQVEVSRFVFEAKTIKRMEILVLSTLEWRMNPVTPLSFLDYFTRRLGLKDYLFCEFLRRCDRTLISAIVDSRLTSYLPSVIATATMLSVVNCIEPCLELQFQNQLLGIVGVDKDKVDSCHTLLTEAFEGDGEKSNKRKFRSSPGSPNGVMDLSLSSDWSSNSWSLPSSVSSSPEPLSKKLRPQDPTPAADFLSIPR 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6073282 6074669 + Bma000875.1 Bma01g00666 75183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00666 362 SMART Cyclin_C_2 199 323 IPR004367 -
Bma01g00666 362 Pfam Cyclin, N-terminal domain 95 197 IPR006671 -
Bma01g00666 362 Pfam Cyclin, C-terminal domain 199 313 IPR004367 -
Bma01g00666 362 PANTHER CYCLINS 54 345 IPR039361 -
Bma01g00666 362 PANTHER CYCLIN D3.1 PROTEIN 54 345 - -
Bma01g00666 362 ProSitePatterns Cyclins signature. 97 128 IPR006671 -
Bma01g00666 362 CDD CYCLIN 97 189 IPR013763 -
Bma01g00666 362 Gene3D - 198 286 - -
Bma01g00666 362 Gene3D - 94 197 - -
Bma01g00666 362 SUPERFAMILY Cyclin-like 65 197 IPR036915 -
Bma01g00666 362 SMART cyclin_7 102 190 IPR013763 -
Bma01g00666 362 MobiDBLite consensus disorder prediction 299 362 - -
Bma01g00666 362 MobiDBLite consensus disorder prediction 306 343 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00666 Bma04g00152 CCT
Bma01g00666 Bma04g00152 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00666 Bma-Chr1:6073282 Bma11g00604 Bma-Chr11:9019130 2.41E-128 dispersed
Bma13g00840 Bma-Chr13:35358155 Bma01g00666 Bma-Chr1:6073282 7.75E-76 dispersed
Bma03g01124 Bma-Chr3:14625199 Bma01g00666 Bma-Chr1:6073282 7.27E-77 transposed
Bma05g00380 Bma-Chr5:12071698 Bma01g00666 Bma-Chr1:6073282 1.51E-06 transposed
Bma01g00666 Bma-Chr1:6073282 Bma01g02262 Bma-Chr1:79793390 5.56E-42 wgd
Bma01g00666 Bma-Chr1:6073282 Bma04g00152 Bma-Chr4:1320268 1.48E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00666 K14505 - pvy:116125632 392.504