Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00670 ATGAAGGCAGTTTGGATGCTCATTCTTCTGCTCACCTTTTGTTTCCCTCAGTTCTCCATGGCTGGCTCAGGTTTTTGTGACTCCAAGTGTGGGGAGAGGTGTGCAAAAGCTGGAGTCCATGACAGGTGCTTGAAGTACTGCGGAATATGCTGTGAGAAGTGTGAGTGTGTGCCTTCAGGTACGTACGGAAACAAGGATGAATGCCCCTGTTACAGAGACCTCAAGAACTCAAAGGGGAACTCCAAGTGTCCATGA 255 49.02 MKAVWMLILLLTFCFPQFSMAGSGFCDSKCGERCAKAGVHDRCLKYCGICCEKCECVPSGTYGNKDECPCYRDLKNSKGNSKCP 84
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6121579 6121911 - Bma000880.1 Bma01g00670 75187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00670 84 PANTHER SNAKIN-1-RELATED 5 84 - -
Bma01g00670 84 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 5 84 - -
Bma01g00670 84 Pfam Gibberellin regulated protein 25 84 IPR003854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00670 - - - gmx:100306110 145.206
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00670 Bma-Chr1:6121579 Bma08g00457 Bma-Chr8:18796017 2.43E-27 dispersed
Bma01g00670 Bma-Chr1:6121579 Bma01g01035 Bma-Chr1:10783051 1.28E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g681 . . . . . . . . Cmo05g00156 . . . . . Sed10g1973 . . Bhi04g00396 Tan02g1765 Cmetu03g1936 . Hepe08g1317 . Lcy13g2120 . . . . . . . Cone4ag1605 . . . . . . . . . . Bda01g01598 Bpe02g01785 . Bma01g00670 . . . . . Cma05g00155 Car05g00135 . Cpe11g00131 . . . . . . . . . . . . . . . Lsi08g01510 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001419 2 3 0 2 2 3 2 3 3 1 3 3 2 3 2 2 3 2 2 3 3 3 2 0 3 3 3 2 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00670 Bma_Chr01 FPKM 11.015304 12.312694 28.086052 29.940691 10.959292 10.178053 9.409631 14.575586 14.037542 14.026788