Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00675 ATGGCCAGGGTTCCAAGAGCTGAAAGTGTTCCAACACTTAACGATGAATCTGACAGAATGTTGAATCAAGACAGTGAATCTCAATATTTAAAACTTCAAAAGATGAGTAATCAACAAGCAACTATCTTAGATAGGGCAAGTAACCAGATCAATCGTGTCGGTGGTAAGCAGGTTCCATTTGCTGTGCTACTGCCTGTATTGTTGCCCCAGCTTGACAAAGACAGAGCGATACAACTTCAAACTTTATTTAACAAGCTAAAGAAAAATGAAATTACAAAAGATGATTTTGTGCGGCTGCTGAGAAACATCGTGGGAGATCAAATGCTCAGATTAGCTGTTTCCAAAGTTCATTTCCAGTCTGCTACCAACCATTTTCAGTTGGAGCCTCCCTCCGCAGCACAACAGCTTCCTCCAAGGACAGTACCTTTAAGCATTGGTGCTCCAGATTTCACCGATCGGCAACCATCCGCACAATTTCATCAGAAAGGCGTCAACTCTTCAGCTACTTCGAATCTTCACTTATCAGCAGCCCAAGGAAAGCCTGATACTGGCTATGTGAAAATAGAAGACAATGAACAATCGTCTCAAGAAGTGGAACGACAAAGTACAAGAGGTGGTTTGTCTTCTTCCATTTCAGGTACTAAAAATCAAGGAAGGGGCCAGTCATCACTTACTTCACAAGAATTAGAAAAGCCTCTGCAACAGCAGCTACCAATTCAACAAAAACATTTTTCTATTTATGGAGCAGGAAGTAGTACTGGAAATTATCACCCATCCTTAGGGACAAGCATCACCACTTCTGCATCATCTTTTAAACCACCATCTGTTGGGTTACAAATTAAGCAGGTTCCTCAACACCGGAGCATTTCAGCTCAATTAGCTGGGAATCTGTCAGGTACAGACATGAGCATTCACACTAGTTATTTCTCTGTTTTTTTTTTCGTTTACTTCCGTTTGACCATTTGTTTTTTCACATTTTGTTTGTTGGCAATCATCAGCAGACCAAAAGCAGAGTTCAGGCCCTTTGTCATCTGTATTTTATTGAAAATAAGAATGAACTTATCAGGGGTAACTTCTAATTTACTAGGGTTGTTTTTTTTGTCTTCTAATTGGGTGATTTTAGGGGCTCGGATTCCTTCTACTGCTGTTGCTTCTGGGGTTAACAGGACTCCTCCAAAGAAACCTTCAATTGGCCGAAAGAAACCACTTGAAACAGATGGTGCTTCACCACCTTCATCTAGCAAGAAGCAAAAAGTCACTGGTGCCTTTTTGGATCAAAGCATTGAACATCTCAATGATGTCACAGCTGTCAGTGGAGTTAACATTAGGGAAGAAGAAGAACAGTTATTTTCCGGTGTAAAGGAGGACATTCGAGTGTCCGAAGCATCACGAAGGATTGCGCAAGAAGAAGAAGAAAGACTCATCTTACAGAAAACGCCATTACAGAAAAAATTGTCTGAAATTATGATCAAATGTGGTCTGAAGGGTATAAGCAACGATGTTGAGAGATGTATTTCATTGTGCGTAGAGGAACGTATGCGTGTTCTTATAAGTAATTTAATCAGATTGTCAAAACAGAGGACTGATGCTGAGAAGTCAAGACACATAACCTTTGTCACTTCTGATGTACGACGACAAATTATGATGATGAATTGGAAGGTGAAAGAAGGATGGGAGAAGAAACAGGCAGAAGTGGAAAAACTCAGGAAGCTTAACGAAACTGAGGACAGCAGTGGAAGAGCTGCTGAAAAGGAGAAAGATGATGGTCGTACTAAGTTGGTGAAGGTGAATCGAGATGAAGATGACAAAATGAGGACAGCTGCGAATGTTGCTGCACGTGCCGCTGTTGGAGGGGACGACATGCTTTCAAAATGGCAACTTATTGCTGAGCAAGCCCGACAAAAACGCGAAGGAGGGTCGTACGGACATGGAGTGGCACCCTCTTCTCAGCCTGTTAAAGACGTTGCTCGCAAGCCTGTGTCAATTTTGAGAAGAAGGGACAATCAAGAAGAAGAGAAAAAGGGAGATGGGAGCCACGTTTCTCCCTCTGGGCCTATTATAAAGTTTGGAAGGAACCAAGTTGGGGCGCCTCGAGACCAAGTGTCTCCAAGCATATCTGTTAGAGATGTGATTGCCGTTCTGGAAAGCGAAGGGCAAATGTCGACATCCACCCTCATATATCGATTATATGATAAAGTTCGGCCTGATGCTGTTACTGAATAA 2223 42.15 MARVPRAESVPTLNDESDRMLNQDSESQYLKLQKMSNQQATILDRASNQINRVGGKQVPFAVLLPVLLPQLDKDRAIQLQTLFNKLKKNEITKDDFVRLLRNIVGDQMLRLAVSKVHFQSATNHFQLEPPSAAQQLPPRTVPLSIGAPDFTDRQPSAQFHQKGVNSSATSNLHLSAAQGKPDTGYVKIEDNEQSSQEVERQSTRGGLSSSISGTKNQGRGQSSLTSQELEKPLQQQLPIQQKHFSIYGAGSSTGNYHPSLGTSITTSASSFKPPSVGLQIKQVPQHRSISAQLAGNLSGTDMSIHTSYFSVFFFVYFRLTICFFTFCLLAIISRPKAEFRPFVICILLKIRMNLSGVTSNLLGLFFLSSNWVILGARIPSTAVASGVNRTPPKKPSIGRKKPLETDGASPPSSSKKQKVTGAFLDQSIEHLNDVTAVSGVNIREEEEQLFSGVKEDIRVSEASRRIAQEEEERLILQKTPLQKKLSEIMIKCGLKGISNDVERCISLCVEERMRVLISNLIRLSKQRTDAEKSRHITFVTSDVRRQIMMMNWKVKEGWEKKQAEVEKLRKLNETEDSSGRAAEKEKDDGRTKLVKVNRDEDDKMRTAANVAARAAVGGDDMLSKWQLIAEQARQKREGGSYGHGVAPSSQPVKDVARKPVSILRRRDNQEEEKKGDGSHVSPSGPIIKFGRNQVGAPRDQVSPSISVRDVIAVLESEGQMSTSTLIYRLYDKVRPDAVTE 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6159690 6165004 - Bma000886.1 Bma01g00675 75192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00675 740 MobiDBLite consensus disorder prediction 663 701 - -
Bma01g00675 740 MobiDBLite consensus disorder prediction 570 593 - -
Bma01g00675 740 Coils Coil 459 479 - -
Bma01g00675 740 MobiDBLite consensus disorder prediction 198 232 - -
Bma01g00675 740 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 231 733 IPR045144 GO:0005669|GO:0006352
Bma01g00675 740 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 11 227 IPR045144 GO:0005669|GO:0006352
Bma01g00675 740 ProSiteProfiles RST domain profile. 51 122 IPR022003 -
Bma01g00675 740 MobiDBLite consensus disorder prediction 154 169 - -
Bma01g00675 740 PANTHER IP01149P-RELATED 231 733 - -
Bma01g00675 740 PANTHER IP01149P-RELATED 11 227 - -
Bma01g00675 740 MobiDBLite consensus disorder prediction 128 169 - -
Bma01g00675 740 MobiDBLite consensus disorder prediction 191 232 - -
Bma01g00675 740 Gene3D Histone, subunit A 476 521 IPR009072 GO:0046982
Bma01g00675 740 MobiDBLite consensus disorder prediction 663 678 - -
Bma01g00675 740 Pfam Transcription initiation factor TFIID component TAF4 family 431 729 IPR007900 GO:0005669|GO:0006352
Bma01g00675 740 MobiDBLite consensus disorder prediction 1 21 - -
Bma01g00675 740 Pfam RCD1-SRO-TAF4 (RST) plant domain 56 116 IPR022003 -
Bma01g00675 740 MobiDBLite consensus disorder prediction 384 418 - -
Bma01g00675 740 CDD TAF4 426 606 IPR007900 GO:0005669|GO:0006352
Bma01g00675 740 MobiDBLite consensus disorder prediction 635 654 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00675 K03129 TAF4; transcription initiation factor TFIID subunit 4 - pvy:116129017 483.026
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00675 Bma05g00052 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00675 Bma-Chr1:6159690 Bma05g00052 Bma-Chr5:2351764 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00865 . . Bda01g01592 . Bpe05g00040 Bma01g00675 Bma05g00052 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004131 2 0 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00675 Bma_Chr01 FPKM 17.599483 13.080872 16.582317 15.59378 22.601654 20.74774 26.819414 34.255859 41.171638 43.484905