Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00676 ATGAGCTGCAACGGGTGCAGAGTGCTGAGAAAAGGGTGTAGCAAGACGTGCGAAATACGATCATGCCTGCGCTGGATAGACTCGCCGGACGCCCAAGCTAACGCCACCTTGTTCCTCGCTAAGTTCTTTGGCCGGACCGACCTCTTATCCTTCATCTCCGCCGTTCCGGATCATGAAAGACCCGGTAACTCTGAGTTTTCTGCTGTAGCTTTGTTTAAGTCGCTGTTATACGAAACTTGTGGAAGAACAGTGAATCCAGTGAACGGAGCGACGGGGCTGTTAGCGTTCGGGAAATGGAACGTTTGCGAGGCTGCAGTGGAAACGGTTCTCTCCGGCGGCGTTCCCCTGCCAATTCAGGGACTTACAGCTGCACTTCCGACGCCAATCTTTGAAGAAACTTTACTCCCACCCAATAACGGCACATGCACTGAGCTAATCGCACCTCGCCTCTTCTACCCATCTTCTCCGTCCGCCGTCAAAGCAAGGGAATGTCAACCGTCCGATTTCGGTAATCTCTCTCAAACAAAACTCGCAGGGAGTGTCACCGGAAGCTGCAGCCATCGCGATCGTAAAGATCTGAAGCTGCTGAATTTACTTGTGTGA 603 52.4 MSCNGCRVLRKGCSKTCEIRSCLRWIDSPDAQANATLFLAKFFGRTDLLSFISAVPDHERPGNSEFSAVALFKSLLYETCGRTVNPVNGATGLLAFGKWNVCEAAVETVLSGGVPLPIQGLTAALPTPIFEETLLPPNNGTCTELIAPRLFYPSSPSAVKARECQPSDFGNLSQTKLAGSVTGSCSHRDRKDLKLLNLLV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6168282 6168950 - Bma000887.2 Bma01g00676 75193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00676 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 175 - -
Bma01g00676 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 175 - -
Bma01g00676 200 ProSiteProfiles LOB domain profile. 1 115 IPR004883 -
Bma01g00676 200 Pfam Lateral organ boundaries (LOB) domain 2 109 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02251 Bma01g00676 CCT
Bma01g00676 Bma01g02251 ECH
Bma01g02251 Bma01g00676 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00676 Bma-Chr1:6168282 Bma06g00353 Bma-Chr6:8119625 4.34E-50 dispersed
Bma01g00676 Bma-Chr1:6168282 Bma01g00677 Bma-Chr1:6170564 1.40E-125 tandem
Bma01g00676 Bma-Chr1:6168282 Bma01g02251 Bma-Chr1:79682963 1.14E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56661 PF03195 LOB 1.50E-17 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00676 - - zju:107433688 194.897