Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00677 | ATGAGCTGCAACGGGTGCAGAGTGCTGAGAAAAGGGTGTAGCAAGACGTGCGAAATACGATCATGCCTGCGCTGGATAGACTCGCCGGACTCCCAAGCTAACGCCACCTTGTTCCTTGCTAAGTTCTTTGGCCGGATCGACCTCTTGTCCTTCATCTCCGCCGTACCTGATCATGAAAGACCCGCTTTGTTCAAGTCTCTGTTATACGAAGCTTGTGGAAGAACAGTGAATCCAGTGAACGGAGCGATCGGGCTGTTAGCGACCGGCAAATGGAACGTTTGCGAGGCTGCAGTGGAAACGGTTCTCTCCGGCGGCGTTCCCCTTCAAATTCAGGGACATACAGTTGCACTTCCGACGCCAATAATTGAAGAAACTTTACTCCCACCCAATAATGGCACATGCACTGAGCTCATCGCACCTCGCCTCTTCTATCTATCTTCTCCGTCCGCCGTCCAAGCAAGGGAATGTAAACCGTCCGATTTCGGCAATCTCTCTCAGACTAAACTCGCAGGGAATGTCACCGGAAGCTGCAGCCATGGCGGTCGTAAAGATCTTAAGCTGCTTAATTTATTTGTCTGA | 579 | 51.3 | MSCNGCRVLRKGCSKTCEIRSCLRWIDSPDSQANATLFLAKFFGRIDLLSFISAVPDHERPALFKSLLYEACGRTVNPVNGAIGLLATGKWNVCEAAVETVLSGGVPLQIQGHTVALPTPIIEETLLPPNNGTCTELIAPRLFYLSSPSAVQARECKPSDFGNLSQTKLAGNVTGSCSHGGRKDLKLLNLFV | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6170564 | 6171232 | - | Bma000888.1 | Bma01g00677 | 75194 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00677 | 192 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN | 1 | 108 | - | - | |
Bma01g00677 | 192 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 101 | IPR004883 | - | |
Bma01g00677 | 192 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 108 | - | - | |
Bma01g00677 | 192 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00677 | Bma-Chr1:6170564 | Bma15g01117 | Bma-Chr15:44210380 | 2.06E-54 | dispersed | |
Bma01g00676 | Bma-Chr1:6168282 | Bma01g00677 | Bma-Chr1:6170564 | 1.40E-125 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56662 | PF03195 | LOB | 7.90E-23 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00677 | - | - | zju:107433688 | 200.675 |