Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00677 ATGAGCTGCAACGGGTGCAGAGTGCTGAGAAAAGGGTGTAGCAAGACGTGCGAAATACGATCATGCCTGCGCTGGATAGACTCGCCGGACTCCCAAGCTAACGCCACCTTGTTCCTTGCTAAGTTCTTTGGCCGGATCGACCTCTTGTCCTTCATCTCCGCCGTACCTGATCATGAAAGACCCGCTTTGTTCAAGTCTCTGTTATACGAAGCTTGTGGAAGAACAGTGAATCCAGTGAACGGAGCGATCGGGCTGTTAGCGACCGGCAAATGGAACGTTTGCGAGGCTGCAGTGGAAACGGTTCTCTCCGGCGGCGTTCCCCTTCAAATTCAGGGACATACAGTTGCACTTCCGACGCCAATAATTGAAGAAACTTTACTCCCACCCAATAATGGCACATGCACTGAGCTCATCGCACCTCGCCTCTTCTATCTATCTTCTCCGTCCGCCGTCCAAGCAAGGGAATGTAAACCGTCCGATTTCGGCAATCTCTCTCAGACTAAACTCGCAGGGAATGTCACCGGAAGCTGCAGCCATGGCGGTCGTAAAGATCTTAAGCTGCTTAATTTATTTGTCTGA 579 51.3 MSCNGCRVLRKGCSKTCEIRSCLRWIDSPDSQANATLFLAKFFGRIDLLSFISAVPDHERPALFKSLLYEACGRTVNPVNGAIGLLATGKWNVCEAAVETVLSGGVPLQIQGHTVALPTPIIEETLLPPNNGTCTELIAPRLFYLSSPSAVQARECKPSDFGNLSQTKLAGNVTGSCSHGGRKDLKLLNLFV 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6170564 6171232 - Bma000888.1 Bma01g00677 75194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00677 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 108 - -
Bma01g00677 192 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Bma01g00677 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 108 - -
Bma01g00677 192 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00677 Bma-Chr1:6170564 Bma15g01117 Bma-Chr15:44210380 2.06E-54 dispersed
Bma01g00676 Bma-Chr1:6168282 Bma01g00677 Bma-Chr1:6170564 1.40E-125 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56662 PF03195 LOB 7.90E-23 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00677 - - zju:107433688 200.675