Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00678 ATGGCTCTTGAAGCTCTTAACTCTCCCTCGGCGCCGTCGCCGGTGTTTCAGTGCGACGGTCCCGATCTCAACTGCTTGGAAGCATGGACGAAGGGGAAGGGGAAGCGGTCCAAGCGCCCGCGTTTAGACGGCGCAGAGACGGAGGAAGAGTATCTCGCTCTCTGCCTTATCATGCTCGCTCGCGGCGGTGCTTCCTTTTCGACTCAGCCGAAAACTGCTGCTCCGTCCACGCCGAAGCTCAACTACAAGTGTTCTGTTTGCGATAAGGCGTTTTCGTCGTACCAGGCTTTGGGGGGACACAAGGCCAGCCACCGGAAACTTATTGGTGGAGAAGATCGATCGACGTCGTCCACTGCTACAACGACTTCTGCTCTAACCTCAGCGACCTCCGGTTCAGCTTCTAAAGCTGGAGTAAGAACTCACGAATGCTCTATTTGCCACAAGTCGTTTCCGACGGGACAGGCCTTGGGTGGACACAAGCGGTGCCACTACGAAGGCGGCAATAAATCTAGCAGCGCCACGGTGACCTCGTCGGAAGGAATCGGCAGCTCCAGCCACATCCGAGGCTTCGATCTGAACCTCCCTGTTTTGCCGGAATTTGCACCGAAATTCCTGGTCTCCGGCGACGACGAGGTAGAGAGCCCTCTACCCGCAAAGAAACCCCGTCTTTTGACGCAACCAAAAATCGAAATCTCTCAAGATCATTGA 708 55.65 MALEALNSPSAPSPVFQCDGPDLNCLEAWTKGKGKRSKRPRLDGAETEEEYLALCLIMLARGGASFSTQPKTAAPSTPKLNYKCSVCDKAFSSYQALGGHKASHRKLIGGEDRSTSSTATTTSALTSATSGSASKAGVRTHECSICHKSFPTGQALGGHKRCHYEGGNKSSSATVTSSEGIGSSSHIRGFDLNLPVLPEFAPKFLVSGDDEVESPLPAKKPRLLTQPKIEISQDH 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6175995 6176702 - Bma000889.1 Bma01g00678 75195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00678 235 MobiDBLite consensus disorder prediction 112 133 - -
Bma01g00678 235 PANTHER ZINC FINGER PROTEIN ZAT10 1 226 - -
Bma01g00678 235 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Bma01g00678 235 MobiDBLite consensus disorder prediction 208 235 - -
Bma01g00678 235 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 226 IPR044653 GO:0003700
Bma01g00678 235 Pfam C2H2-type zinc finger 82 106 - -
Bma01g00678 235 Pfam C2H2-type zinc finger 141 164 - -
Bma01g00678 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 163 IPR013087 -
Bma01g00678 235 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Bma01g00678 235 Gene3D Classic Zinc Finger 80 163 - -
Bma01g00678 235 SUPERFAMILY beta-beta-alpha zinc fingers 82 163 IPR036236 -
Bma01g00678 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Bma01g00678 235 MobiDBLite consensus disorder prediction 108 133 - -
Bma01g00678 235 SMART c2h2final6 141 163 IPR013087 -
Bma01g00678 235 SMART c2h2final6 82 104 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00678 Bma-Chr1:6175995 Bma05g00067 Bma-Chr5:2528079 3.62E-128 dispersed
Bma01g00678 Bma-Chr1:6175995 Bma01g02250 Bma-Chr1:79678041 3.77E-94 wgd
Bma01g00678 Bma-Chr1:6175995 Bma05g00055 Bma-Chr5:2378669 1.38E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56663 PF13912 zf-C2H2_6 1.60E-12 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00678 - - tcc:18591995 281.567