Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00679 | ATGATGATCGGCGAACGGAACCGTCTCAATCCCACCATTCAGATCCCTGATTGGAACCCCCTTGATGATTCGACGGTGGTGGCTTCTCCGTTTTCTCCCATGAATAGTCCCTCTTCTCTGGACCCTGTTATTGCGCTCCACCGTTTCCTCCCGTCTAATGAGTCTGATTTTCCCAACAAGGAGATGGACGCCTTCTCGTGTGACCATTTCAGAATGTTTGAGTTCAAGGTAAGGATGTGCGCGCGGGGAAGGTCACACGATTGGACGGAATGTCCCTATGCGCATCCTGGAGAGAAGGCTCGCCGGAGAGATCCAGTGAAGTATCGTTACTCCGGCGCCTCGTGCCCTGATTTGCGGAAAGGTATTTGTAAGAAGGGCGATTCCTGCGAGTTCGCTCACGGAGTCTTCGAGTGTTGGCTACATCCGGCTCGGTACCGGACTCAGCCGTGCAAGGACGGGATAGGTTGCCGTCGGCGGGTGTGTTTCTTCGCACACTCCGCGGAACAACTCCGTGTTCTTCCTCAGCAGAGTCCTGTGGTTCACGGATCTACCGAGTCCTTCGAAGGATCTCCGATTCGTCGGGCGTTTGAAATTAACATGACTAAGGGGTACCCTTCTCTGTCATCGCCAACGTCAATCTTGAACTCGCCGCCATTATCTCCTTCCGACTCGCCGCCAATGTCTCCCGTTAGCCCTCAAGTCGGCGGCGGATTCGGATCGCCTAAGTCTGTCTATGAACTTCTCACTTCAATGCGTAATCTCCACGTTGGAAATACGAAATCAAGCCGTCAAAGAGAGAAACCATCGGTTAGTTCTCTTCGCAGTTCCACTCTTCGACCTGTTTTCTGTGATTCTCCTGCGCGGACCCGTATTCCGGCTCGCTCCGGAGGGAGTTTCTGTGATTTTTGGGACCAAGCTTTAATGGAAGATCCTGCAATGGAAAGGGTGGAGTCTGGAAGAGACATCCGAGCTCAAATGTATGTCAAACTCAGTCAGGAAAACTCACTCGGCTCAGCCGACCCGGCTCCTGATATTGGGTGGGTCTCCGAGTTAGTCAAGTGA | 1062 | 52.92 | MMIGERNRLNPTIQIPDWNPLDDSTVVASPFSPMNSPSSLDPVIALHRFLPSNESDFPNKEMDAFSCDHFRMFEFKVRMCARGRSHDWTECPYAHPGEKARRRDPVKYRYSGASCPDLRKGICKKGDSCEFAHGVFECWLHPARYRTQPCKDGIGCRRRVCFFAHSAEQLRVLPQQSPVVHGSTESFEGSPIRRAFEINMTKGYPSLSSPTSILNSPPLSPSDSPPMSPVSPQVGGGFGSPKSVYELLTSMRNLHVGNTKSSRQREKPSVSSLRSSTLRPVFCDSPARTRIPARSGGSFCDFWDQALMEDPAMERVESGRDIRAQMYVKLSQENSLGSADPAPDIGWVSELVK | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6211409 | 6212470 | - | Bma000890.1 | Bma01g00679 | 75196 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00679 | 353 | Gene3D | - | 106 | 178 | - | - | |
Bma01g00679 | 353 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 7 | 353 | - | - | |
Bma01g00679 | 353 | PANTHER | UNKEMPT FAMILY MEMBER | 7 | 353 | IPR045234 | - | |
Bma01g00679 | 353 | SMART | c3hfinal6 | 109 | 135 | IPR000571 | GO:0046872 | |
Bma01g00679 | 353 | SMART | c3hfinal6 | 144 | 167 | IPR000571 | GO:0046872 | |
Bma01g00679 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 109 | 136 | IPR000571 | GO:0046872 | |
Bma01g00679 | 353 | MobiDBLite | consensus disorder prediction | 256 | 275 | - | - | |
Bma01g00679 | 353 | MobiDBLite | consensus disorder prediction | 207 | 231 | - | - | |
Bma01g00679 | 353 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 114 | 134 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00679 | Bma-Chr1:6211409 | Bma06g00840 | Bma-Chr6:42728230 | 1.78E-118 | dispersed | |
Bma01g00679 | Bma-Chr1:6211409 | Bma01g00217 | Bma-Chr1:1937404 | 2.74E-124 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56664 | PF00642 | zf-CCCH | 2.30E-05 | CL0537 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00679 | - | - | vvi:100247549 | 409.453 |