Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00679 ATGATGATCGGCGAACGGAACCGTCTCAATCCCACCATTCAGATCCCTGATTGGAACCCCCTTGATGATTCGACGGTGGTGGCTTCTCCGTTTTCTCCCATGAATAGTCCCTCTTCTCTGGACCCTGTTATTGCGCTCCACCGTTTCCTCCCGTCTAATGAGTCTGATTTTCCCAACAAGGAGATGGACGCCTTCTCGTGTGACCATTTCAGAATGTTTGAGTTCAAGGTAAGGATGTGCGCGCGGGGAAGGTCACACGATTGGACGGAATGTCCCTATGCGCATCCTGGAGAGAAGGCTCGCCGGAGAGATCCAGTGAAGTATCGTTACTCCGGCGCCTCGTGCCCTGATTTGCGGAAAGGTATTTGTAAGAAGGGCGATTCCTGCGAGTTCGCTCACGGAGTCTTCGAGTGTTGGCTACATCCGGCTCGGTACCGGACTCAGCCGTGCAAGGACGGGATAGGTTGCCGTCGGCGGGTGTGTTTCTTCGCACACTCCGCGGAACAACTCCGTGTTCTTCCTCAGCAGAGTCCTGTGGTTCACGGATCTACCGAGTCCTTCGAAGGATCTCCGATTCGTCGGGCGTTTGAAATTAACATGACTAAGGGGTACCCTTCTCTGTCATCGCCAACGTCAATCTTGAACTCGCCGCCATTATCTCCTTCCGACTCGCCGCCAATGTCTCCCGTTAGCCCTCAAGTCGGCGGCGGATTCGGATCGCCTAAGTCTGTCTATGAACTTCTCACTTCAATGCGTAATCTCCACGTTGGAAATACGAAATCAAGCCGTCAAAGAGAGAAACCATCGGTTAGTTCTCTTCGCAGTTCCACTCTTCGACCTGTTTTCTGTGATTCTCCTGCGCGGACCCGTATTCCGGCTCGCTCCGGAGGGAGTTTCTGTGATTTTTGGGACCAAGCTTTAATGGAAGATCCTGCAATGGAAAGGGTGGAGTCTGGAAGAGACATCCGAGCTCAAATGTATGTCAAACTCAGTCAGGAAAACTCACTCGGCTCAGCCGACCCGGCTCCTGATATTGGGTGGGTCTCCGAGTTAGTCAAGTGA 1062 52.92 MMIGERNRLNPTIQIPDWNPLDDSTVVASPFSPMNSPSSLDPVIALHRFLPSNESDFPNKEMDAFSCDHFRMFEFKVRMCARGRSHDWTECPYAHPGEKARRRDPVKYRYSGASCPDLRKGICKKGDSCEFAHGVFECWLHPARYRTQPCKDGIGCRRRVCFFAHSAEQLRVLPQQSPVVHGSTESFEGSPIRRAFEINMTKGYPSLSSPTSILNSPPLSPSDSPPMSPVSPQVGGGFGSPKSVYELLTSMRNLHVGNTKSSRQREKPSVSSLRSSTLRPVFCDSPARTRIPARSGGSFCDFWDQALMEDPAMERVESGRDIRAQMYVKLSQENSLGSADPAPDIGWVSELVK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6211409 6212470 - Bma000890.1 Bma01g00679 75196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00679 353 Gene3D - 106 178 - -
Bma01g00679 353 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 353 - -
Bma01g00679 353 PANTHER UNKEMPT FAMILY MEMBER 7 353 IPR045234 -
Bma01g00679 353 SMART c3hfinal6 109 135 IPR000571 GO:0046872
Bma01g00679 353 SMART c3hfinal6 144 167 IPR000571 GO:0046872
Bma01g00679 353 ProSiteProfiles Zinc finger C3H1-type profile. 109 136 IPR000571 GO:0046872
Bma01g00679 353 MobiDBLite consensus disorder prediction 256 275 - -
Bma01g00679 353 MobiDBLite consensus disorder prediction 207 231 - -
Bma01g00679 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 134 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00679 Bma-Chr1:6211409 Bma06g00840 Bma-Chr6:42728230 1.78E-118 dispersed
Bma01g00679 Bma-Chr1:6211409 Bma01g00217 Bma-Chr1:1937404 2.74E-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56664 PF00642 zf-CCCH 2.30E-05 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00679 - - vvi:100247549 409.453