Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00681 ATGGCCAAGTCAGTGGAGCCGCCTGACGGATTTAAGGCAAAGGGAAAGCACTATTACACAATGTGGAATACATTGTTCGAGCTTGATTTGAAATATGTTCCGATCAAACCGCTAGGCAGAGGGTCATACGGAGTGGTGTGCTCTTCCATTAACAGGGAAACCAGTAAGAGAGTGGCGATCAAGAAGATCAGCAACACATTCGACCATCCAATCAATGCATTGAGAACTCTGAGGGAGCTGAAGTTGCTGCGGAAGATTCAACATAGCAATGTGATCGCTTTGAAGGATGTGATGATGCCCAGCCATAGATCCAGCTTCAAGGATGTGTATTTGGTTTACGAGCTGATGGATACGGATCTCGATCGAATTATTAACTCCTCAATAGCCCTTTCAACTGATCATTGCCAGTATTTCCTCTTTCAGTTGCTTGAGGGGCTGAAATACATACATTCCGGCAATGTTCTTCACCGCGATTTGAAGCCCGCGAACCTCCTTGTCAACGCCAACTTCGATTTGAAGATTTGTGATTTTGGACTGGCGAGGACGAAACAAGAAAATGACGAGTGTATGACTAAGTATGTCGTCACACGTTGGTATCGTGCCCCAGAGATACTATTGGGTTGTGACAACTATGGAACTTCGATTGACATGTGGTCTGTTGGTTGTATATTTGCTGAAATTCTTGGGAGGACACCTATCTTTCCAGGCACTGATATTCTAAACCAGCTGAATTTAATCATCGACCTTCTTGGTAGTCAGCAAGAAGAAGATTTAGAGTTTATCAAGAGTCCAAATGTGAAAGAGTACATAAAGTCACTTCCTTTTTCAAGGGGAGTGGACTTTTCGCGTTGTTATCCTAGTGCTGATCCATTGGCCATAAATTTGTTGCAAAAGATGCTCGTTTTTAATCCAACTAAAAGAATTTCAGCGATGGAAGCACTTGAACATCCCTTCATGAGAGAACTTTGCGACCCTAAAGATTTTTCACTAGGTCCCCCAGCCATCGATCTCGACGTAGATGAGAAGGTCGGAGTAGACACAATCAGAGAGATGATTTTGAAGGAGATACTTTATTATCATCCCGAAGCTTCTTTTTTA 1098 42.99 MAKSVEPPDGFKAKGKHYYTMWNTLFELDLKYVPIKPLGRGSYGVVCSSINRETSKRVAIKKISNTFDHPINALRTLRELKLLRKIQHSNVIALKDVMMPSHRSSFKDVYLVYELMDTDLDRIINSSIALSTDHCQYFLFQLLEGLKYIHSGNVLHRDLKPANLLVNANFDLKICDFGLARTKQENDECMTKYVVTRWYRAPEILLGCDNYGTSIDMWSVGCIFAEILGRTPIFPGTDILNQLNLIIDLLGSQQEEDLEFIKSPNVKEYIKSLPFSRGVDFSRCYPSADPLAINLLQKMLVFNPTKRISAMEALEHPFMRELCDPKDFSLGPPAIDLDVDEKVGVDTIREMILKEILYYHPEASFL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6251390 6252613 + Bma030198 Bma01g00681 75198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00681 366 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Bma01g00681 366 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Bma01g00681 366 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00681 366 SUPERFAMILY Protein kinase-like (PK-like) 31 325 IPR011009 -
Bma01g00681 366 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Bma01g00681 366 Gene3D Transferase(Phosphotransferase) domain 1 116 333 - -
Bma01g00681 366 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00681 366 Gene3D Phosphorylase Kinase; domain 1 19 115 - -
Bma01g00681 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Bma01g00681 366 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00681 Bma-Chr1:6251390 Bma03g01015 Bma-Chr3:11281522 0 dispersed
Bma03g00981 Bma-Chr3:10482002 Bma01g00681 Bma-Chr1:6251390 1.33E-61 dispersed
Bma06g00112 Bma-Chr6:1573649 Bma01g00681 Bma-Chr1:6251390 4.24E-98 dispersed
Bma01g00681 Bma-Chr1:6251390 Bma03g00980 Bma-Chr3:10453722 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66257 PF00069 Pkinase 1.90E-70 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00681 K20535 K20537 cit:102623819 535.413