Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00682 ATGTATGGCTTCTATCTCTATCTGAAAGCATACTCACTTTACCCTTCCCACTTTACTTGTTTATGGTTTAAAAAATTGACCTTTCTCTCTCCTTGGTTCTCTTTCTTGTTGGTTCTTATTTTTTTGTTTTTTCCTTTCTGGGTTGTTTTTGATTCAGGCTATAACAATGGCGGCTTAAACTGTGGAAGCATGCAGGGTGCTTTAACAGGAGTCAGACGCCCTTTCACTCCATCTCAATGGATGGAGCTTGAGCATCAGGCCTTGATATATAAATACATTGCTGCAAATGTATCCGTGCCTTCTAATCTTCTCATACCCATCAAAAAGTCGATAGATTCTGCTGGGTTTTCTAGTTTTCCGGCGGGTTTTCTCCGACCCAATGCATTGGGATGGGGTACTTTTCCCATGGGATTCTCCGGCAACTCCGATCCAGAACCGGGAAGGTGTCGGCGAACTGATGGGAAGAAATGGAGGTGCTCCAAAGATGCTGTGGCTGACCAGAAATACTGCGAGCGGCACATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAGCTGGCCATTCTGTTGCCGGAATTTCAGCCTCCATCACTTCAAAGCTGATCGCTTCCCCTTCAGCTTCCACGGTGGTTTCTGGCGCGGGTACCCACAACACCCACGCCATTCCCAACCAACTCCTCAAGAACTTGCCTCCTGCCTCATTCCACACTTCTGGCTCCACCCAGGCCAACAGGATGTTAATGGAGAAAGATAATGGAGACAGAGTGCAAAATGCATCATGTTTCTCAGCTCTCTCGTCTACTGAAATCGCTCTGGAATCCAAACAAACCTCGTTCATAATTCCAAAGCAGCAAATTTCATACGAAGCATCTCCCCGAACAGAGTATGGGTTCGTCTCAGATGGTTTCCTCGAGCCGTCATTGCATAAAAACTCGATAACGACCTGCAAAAGTTTTGGTTCGGAAGGAGAAACTGAATCACGACTTCACAATTTCATTTGGCCTAAAAACCAGTCTGATCAATCTATCGTCTCCTGGTCTGGTTTCGACACTCGATCAGATGGAACCCAGTTATCAATGTCAACGACGCCCGTGACTGTCTCAGACCTCACGGCTTCTTCTGCTGCTACGACTGAGAAACTCACGCTCTCACCTCTCAGGCTGTTGAGGGAGTTCAACCCAATTCAAATGGAACTTGGAGTGAACGAAACAAGCAATAGACAATCGAATCGGATTCCAATATCATGGGGAAGTTCCATGGGAGGACCTCTGGGGGAGGTTTTGAAACATACCAACAACAATGGGGGGGAGTGCAAGAGCAGCTCAGCCCTTAATCTAATGACGGAGGGGTGGGATAGTAGCCCTCCTGTAGGGTCATCTCCAACAGGTGTCCTTCAAAAGACTTCATTTGGGTCAGTTTCAACCAGCAGTACAGGAAGCAGTCCTAGAGCGGACAACAACAGGATCCATGAGGGGGCAACCCGCTGCAATGATCTTCTGGGCCAACTTTTATGA 1524 47.57 MYGFYLYLKAYSLYPSHFTCLWFKKLTFLSPWFSFLLVLIFLFFPFWVVFDSGYNNGGLNCGSMQGALTGVRRPFTPSQWMELEHQALIYKYIAANVSVPSNLLIPIKKSIDSAGFSSFPAGFLRPNALGWGTFPMGFSGNSDPEPGRCRRTDGKKWRCSKDAVADQKYCERHMNRGRHRSRKPVEGQAGHSVAGISASITSKLIASPSASTVVSGAGTHNTHAIPNQLLKNLPPASFHTSGSTQANRMLMEKDNGDRVQNASCFSALSSTEIALESKQTSFIIPKQQISYEASPRTEYGFVSDGFLEPSLHKNSITTCKSFGSEGETESRLHNFIWPKNQSDQSIVSWSGFDTRSDGTQLSMSTTPVTVSDLTASSAATTEKLTLSPLRLLREFNPIQMELGVNETSNRQSNRIPISWGSSMGGPLGEVLKHTNNNGGECKSSSALNLMTEGWDSSPPVGSSPTGVLQKTSFGSVSTSSTGSSPRADNNRIHEGATRCNDLLGQLL 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6263962 6265740 + Bma000892.1 Bma01g00682 75199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00682 507 ProSiteProfiles WRC domain profile. 143 187 IPR014977 -
Bma01g00682 507 PANTHER GROWTH-REGULATING FACTOR 9 46 493 - -
Bma01g00682 507 Pfam WRC 144 186 IPR014977 -
Bma01g00682 507 SMART QLQ_2 73 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bma01g00682 507 ProSiteProfiles QLQ domain profile. 74 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bma01g00682 507 MobiDBLite consensus disorder prediction 450 490 - -
Bma01g00682 507 MobiDBLite consensus disorder prediction 450 495 - -
Bma01g00682 507 PANTHER - 46 493 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bma01g00682 507 Pfam QLQ 74 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00682 - - - vvi:100260890 535.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00682 Bma-Chr1:6263962 Bma05g00025 Bma-Chr5:1886792 0 dispersed
Bma02g01140 Bma-Chr2:53184911 Bma01g00682 Bma-Chr1:6263962 2.28E-11 transposed
Bma01g00682 Bma-Chr1:6263962 Bma01g02241 Bma-Chr1:79567867 7.42E-09 wgd
Bma01g00682 Bma-Chr1:6263962 Bma04g00140 Bma-Chr4:1108211 5.56E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g612 Blo01g01488 Blo12g00996 Bda01g00599 Bda03g00162 Bpe02g00463 Bpe04g00144 . . Cmo05g00128 Cmo12g00548 . . . Car12g00553 . . Cpe07g00530 Bhi04g00454 Tan02g1695 . . Hepe08g1351 . . Cla08g01639 Cam08g2143 Cec08g1730 Cco08g1850 Clacu08g1831 . Cre08g1614 Cone4ag1631 Cone7ag1319 Cone17ag0901 Cone20ag0243 . . . Cme03g02123 . Blo18g00727 . Bda01g01584 Bpe02g01773 . Bma01g00682 . . . . Cma12g00612 Cma05g00124 Car05g00106 . Cpe11g00107 . . . . . . . . . . . . . . . Lsi08g01545 Csa02g01873 Chy03g01613 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001015 3 4 5 4 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 2 3 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56665 PF08879 WRC 4.10E-21 No_clan Bma TF