Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00689 ATGAACATGATGGAAGTTGAAGAAAAACCACTGAGCGGTTCACCCATTGACCCTGAAGCGGAGATATCTGTGGCTGATATGCAAGTCCAACTCCAAGAATCCGCTCTGCCAACAGATGACCTTAACTTATGCGAAAGTGTGCCTGGAGTAGTTAATCGGGGTGATGATGACCAAGAAATGGTTCATTGTCCTGATGAAAAGAATCAAGCTGATGTGCAAGTTGATGATGCTGAGGTTCATCAGCTGTCTGAAAATAAAATCACTAACAGTGATACATGCGATGCAAAGGTTGATGATGCTAGTCTTCATCAGCTGCCAGAAAATAACATCACTATCAGCAATACATGCACTGTGAATCATCTCAAGGTTGATGCGCCTGCTTCCCCCAAGAAATCTTCCCCAAAGAAATCTTTGTTGCGTAAAGCTCCAGAAATGAAGTATGGGCTTGATGATTCTGAGATGGGTGAGGCTGACGAATCAGGGACATCAGAGGAGAGAGCGGCATTTATGACGGAGCTGGAGAGTTTTTACAGGGAAAACACATTGGAATTTAAACCTCCTAAATTTTATGGGGAGCCACTAAATTGTCTGAAGTTGTGGAGAGCAGTGATCAGATTGGGAGGCTATGATGTGGTGACCGCGGCCAAGTTGTGGCGACAAGTAGGCGAGTCTTTCCACCCTCCCAAGACTTGCACAACAGTATCTTGGACATTCCGCATTTTCTATGAGAAGGCACTTTTGGAGTATGAAAAGCATAAAAAGCAAATTGGGGAGCTTCAATTTCCTGTCGTTGGATCTCTTGTTCAGTCTGCGGGCATTGAAGAAGAGGGAAGTGGCTATCAAGCTCCTGGATCAGGTAGGGCAAGAAGGGATTCCGCAGCTCGAGCTATGCAGGGTTGGCATGCACAGAAACTTCTTAGTTATGGTGAGGTTGCAGAGCCTGTTATTAAGGACAAGAACTTGAATTCTACAGTAAAGCGTGAAAAGAATCTCAAAAGCATCGGTTTCCTCAAACACAGGAATCAAATTAATACTGAGCTCAATGAAAAGGCTTCGAACATCGACTCAGATAAACAATTGATTACTACCATTGTCGATGTTGGTCAGCCAGCGGACTGGGTGAAGATCACTGTGCGTGAAACAAAAGATTCCTTTGAGGTATATGCTCTAGTTCCAGGACTTCTGCGTGAGGAGGTGAGAGTTCAGTCAGATCCTGCTGGACGACTAGTTATAACTGGGCAGCCACAGCAGCTGGATAATCCTTGGGGTATCACTCCATTTAAAAAGGTGGTGACCTTACCTGGCAGAATCGATCCACTTCAGACATCCGCTGTAGTCAGCTTACATGGCCGACTATTTGTGCGCGTTCCATTCGAGCGTGGATCTGTTTGA 1392 45.26 MNMMEVEEKPLSGSPIDPEAEISVADMQVQLQESALPTDDLNLCESVPGVVNRGDDDQEMVHCPDEKNQADVQVDDAEVHQLSENKITNSDTCDAKVDDASLHQLPENNITISNTCTVNHLKVDAPASPKKSSPKKSLLRKAPEMKYGLDDSEMGEADESGTSEERAAFMTELESFYRENTLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTAAKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKKQIGELQFPVVGSLVQSAGIEEEGSGYQAPGSGRARRDSAARAMQGWHAQKLLSYGEVAEPVIKDKNLNSTVKREKNLKSIGFLKHRNQINTELNEKASNIDSDKQLITTIVDVGQPADWVKITVRETKDSFEVYALVPGLLREEVRVQSDPAGRLVITGQPQQLDNPWGITPFKKVVTLPGRIDPLQTSAVVSLHGRLFVRVPFERGSV 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6328607 6337953 + Bma000899.1 Bma01g00689 75206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00689 463 CDD ARID 165 250 - -
Bma01g00689 463 MobiDBLite consensus disorder prediction 125 161 - -
Bma01g00689 463 ProSiteProfiles ARID domain profile. 163 254 IPR001606 GO:0003677
Bma01g00689 463 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 63 460 - -
Bma01g00689 463 MobiDBLite consensus disorder prediction 137 161 - -
Bma01g00689 463 Gene3D - 341 462 IPR008978 -
Bma01g00689 463 SMART ARID_2 160 250 - -
Bma01g00689 463 CDD ACD_sHsps_p23-like 378 457 - -
Bma01g00689 463 Gene3D - 163 261 IPR036431 GO:0003677
Bma01g00689 463 Pfam ARID/BRIGHT DNA binding domain 166 250 IPR001606 GO:0003677
Bma01g00689 463 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 63 460 IPR045147 GO:0006357
Bma01g00689 463 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 362 463 IPR002068 -
Bma01g00689 463 SMART bright_3 164 255 IPR001606 GO:0003677
Bma01g00689 463 SUPERFAMILY ARID-like 161 261 IPR036431 GO:0003677
Bma01g00689 463 Pfam Hsp20/alpha crystallin family 378 458 IPR002068 -
Bma01g00689 463 SUPERFAMILY HSP20-like chaperones 373 458 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00689 - - - qsu:112029964 528.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00689 Bma-Chr1:6328607 Bma15g00913 Bma-Chr15:31946490 1.81E-128 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g36 . . . . . . . . . . Cma01g02043 . Car01g01610 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01577 . . Bma01g00689 . . Cmo01g02101 . . . . . . Cpe02g00012 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g01290 BCT 27 340 ARID Transcription Factor Family AT1G04880 60.8 1.6e-98 356.7
Bma04g01053 BCT 27 272 ARID Transcription Factor Family AT1G04880 55.5 2.1e-69 260.0
Bma01g00689 . 151 430 ARID Transcription Factor Family AT1G20910 66.4 1.2e-100 363.6
Bma15g00913 . 37 329 ARID Transcription Factor Family AT1G20910 53.8 3.0e-80 295.8
Bma01g02389 . 1 295 ARID Transcription Factor Family AT1G76110 59.4 8.9e-89 323.9
Bma01g00689 . 119 460 ARID Transcription Factor Family AT1G76510 67.0 2.4e-123 439.1
Bma15g00913 . 14 359 ARID Transcription Factor Family AT1G76510 55.7 4.5e-101 365.2
Bma13g01143 . 42 324 ARID Transcription Factor Family AT3G13350 52.2 1.7e-81 299.7
Bma10g00669 . 2 801 ARID Transcription Factor Family AT3G43240 55.3 6.2e-252 867.1
Bma10g00710 . 1 774 ARID Transcription Factor Family AT3G43240 56.6 6.2e-252 867.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56666 PF00011 HSP20 2.10E-05 CL0190 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00689 Bma_Chr01 FPKM 0.0 0.0 0.0 0.409491 0.0 0.0 0.0 0.0 0.0 0.844001