Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00689 ATGAACATGATGGAAGTTGAAGAAAAACCACTGAGCGGTTCACCCATTGACCCTGAAGCGGAGATATCTGTGGCTGATATGCAAGTCCAACTCCAAGAATCCGCTCTGCCAACAGATGACCTTAACTTATGCGAAAGTGTGCCTGGAGTAGTTAATCGGGGTGATGATGACCAAGAAATGGTTCATTGTCCTGATGAAAAGAATCAAGCTGATGTGCAAGTTGATGATGCTGAGGTTCATCAGCTGTCTGAAAATAAAATCACTAACAGTGATACATGCGATGCAAAGGTTGATGATGCTAGTCTTCATCAGCTGCCAGAAAATAACATCACTATCAGCAATACATGCACTGTGAATCATCTCAAGGTTGATGCGCCTGCTTCCCCCAAGAAATCTTCCCCAAAGAAATCTTTGTTGCGTAAAGCTCCAGAAATGAAGTATGGGCTTGATGATTCTGAGATGGGTGAGGCTGACGAATCAGGGACATCAGAGGAGAGAGCGGCATTTATGACGGAGCTGGAGAGTTTTTACAGGGAAAACACATTGGAATTTAAACCTCCTAAATTTTATGGGGAGCCACTAAATTGTCTGAAGTTGTGGAGAGCAGTGATCAGATTGGGAGGCTATGATGTGGTGACCGCGGCCAAGTTGTGGCGACAAGTAGGCGAGTCTTTCCACCCTCCCAAGACTTGCACAACAGTATCTTGGACATTCCGCATTTTCTATGAGAAGGCACTTTTGGAGTATGAAAAGCATAAAAAGCAAATTGGGGAGCTTCAATTTCCTGTCGTTGGATCTCTTGTTCAGTCTGCGGGCATTGAAGAAGAGGGAAGTGGCTATCAAGCTCCTGGATCAGGTAGGGCAAGAAGGGATTCCGCAGCTCGAGCTATGCAGGGTTGGCATGCACAGAAACTTCTTAGTTATGGTGAGGTTGCAGAGCCTGTTATTAAGGACAAGAACTTGAATTCTACAGTAAAGCGTGAAAAGAATCTCAAAAGCATCGGTTTCCTCAAACACAGGAATCAAATTAATACTGAGCTCAATGAAAAGGCTTCGAACATCGACTCAGATAAACAATTGATTACTACCATTGTCGATGTTGGTCAGCCAGCGGACTGGGTGAAGATCACTGTGCGTGAAACAAAAGATTCCTTTGAGGTATATGCTCTAGTTCCAGGACTTCTGCGTGAGGAGGTGAGAGTTCAGTCAGATCCTGCTGGACGACTAGTTATAACTGGGCAGCCACAGCAGCTGGATAATCCTTGGGGTATCACTCCATTTAAAAAGGTGGTGACCTTACCTGGCAGAATCGATCCACTTCAGACATCCGCTGTAGTCAGCTTACATGGCCGACTATTTGTGCGCGTTCCATTCGAGCGTGGATCTGTTTGA 1392 45.26 MNMMEVEEKPLSGSPIDPEAEISVADMQVQLQESALPTDDLNLCESVPGVVNRGDDDQEMVHCPDEKNQADVQVDDAEVHQLSENKITNSDTCDAKVDDASLHQLPENNITISNTCTVNHLKVDAPASPKKSSPKKSLLRKAPEMKYGLDDSEMGEADESGTSEERAAFMTELESFYRENTLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTAAKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKKQIGELQFPVVGSLVQSAGIEEEGSGYQAPGSGRARRDSAARAMQGWHAQKLLSYGEVAEPVIKDKNLNSTVKREKNLKSIGFLKHRNQINTELNEKASNIDSDKQLITTIVDVGQPADWVKITVRETKDSFEVYALVPGLLREEVRVQSDPAGRLVITGQPQQLDNPWGITPFKKVVTLPGRIDPLQTSAVVSLHGRLFVRVPFERGSV 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6328607 6337953 + Bma000899.1 Bma01g00689 75206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00689 463 CDD ARID 165 250 - -
Bma01g00689 463 MobiDBLite consensus disorder prediction 125 161 - -
Bma01g00689 463 ProSiteProfiles ARID domain profile. 163 254 IPR001606 GO:0003677
Bma01g00689 463 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 63 460 - -
Bma01g00689 463 MobiDBLite consensus disorder prediction 137 161 - -
Bma01g00689 463 Gene3D - 341 462 IPR008978 -
Bma01g00689 463 SMART ARID_2 160 250 - -
Bma01g00689 463 CDD ACD_sHsps_p23-like 378 457 - -
Bma01g00689 463 Gene3D - 163 261 IPR036431 GO:0003677
Bma01g00689 463 Pfam ARID/BRIGHT DNA binding domain 166 250 IPR001606 GO:0003677
Bma01g00689 463 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 63 460 IPR045147 GO:0006357
Bma01g00689 463 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 362 463 IPR002068 -
Bma01g00689 463 SMART bright_3 164 255 IPR001606 GO:0003677
Bma01g00689 463 SUPERFAMILY ARID-like 161 261 IPR036431 GO:0003677
Bma01g00689 463 Pfam Hsp20/alpha crystallin family 378 458 IPR002068 -
Bma01g00689 463 SUPERFAMILY HSP20-like chaperones 373 458 IPR008978 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00689 Bma-Chr1:6328607 Bma15g00913 Bma-Chr15:31946490 1.81E-128 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56666 PF00011 HSP20 2.10E-05 CL0190 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00689 - - qsu:112029964 528.48